View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11310_high_9 (Length: 244)
Name: NF11310_high_9
Description: NF11310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11310_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 37161435 - 37161209
Alignment:
| Q |
1 |
ttagctggatattgtactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattcaatccctgataatcatc |
100 |
Q |
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| T |
37161435 |
ttagctggatattccactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattcaatccctgataatcatc |
37161336 |
T |
|
| Q |
101 |
tagccgttgaaactctccttctctccgttgatccttatcttcgtggaagaatcactggtacctcagaaggccttttcatttcacaatatcaacttaatca |
200 |
Q |
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|||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37161335 |
tagcagttgaaactctccttctttccgttgacccttatcttcgtggaagaatcactggtacctcagaaggccttttcatttcacaatatcaacttaatca |
37161236 |
T |
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| Q |
201 |
ggtacat-ttttatttcattttattct |
226 |
Q |
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| T |
37161235 |
ggtacattttttatttcattttattct |
37161209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 37155834 - 37155692
Alignment:
| Q |
1 |
ttagctggatattgtactgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattcaatccctgataatcatc |
100 |
Q |
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||||||| ||||||| ||||||||||||| ||||||||||||||||||||||| ||||| |||| |||||||||||| ||||||||||||||||| |||| |
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| T |
37155834 |
ttagctgaatattgtcctgaaggtgttccgacctcagatcatcttaaactccggactgtttctcgttctcttgccgacgattcaatccctgataaccatc |
37155735 |
T |
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| Q |
101 |
tagccgttgaaactctccttctctccgttgatccttatcttcg |
143 |
Q |
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| T |
37155734 |
tagccgtcgaaactctccttctctccgttgatccttatcttcg |
37155692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 37150692 - 37150500
Alignment:
| Q |
17 |
ctgaaggtgttccaacctcagatcatcttaaactccgtactgtgtctctttctcttgccgatgattcaatccctgataatcatctagccgttgaaactct |
116 |
Q |
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|||| ||||||||||| || ||||||||||||||||| ||||| ||||||||||||||| |||| |||||||||||| | |||||| ||| |||||||| |
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| T |
37150692 |
ctgagggtgttccaacgtcggatcatcttaaactccgcactgtttctctttctcttgcccatgaatcaatccctgatgaccatctaatcgtcgaaactct |
37150593 |
T |
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| Q |
117 |
ccttctctccgttgatccttatcttcgtggaagaatcactggtacctcagaaggccttttcatttcacaatatcaacttaatcaggtacattt |
209 |
Q |
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||||||||| |||||||| |||||||| |||| |||||| || ||| ||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
37150592 |
ccttctctctgttgatccatatcttcgcggaacaatcaccggcacccttgaaggccttttcattccacaatatcaacttaatcaggtacattt |
37150500 |
T |
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