View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11310_low_1 (Length: 465)
Name: NF11310_low_1
Description: NF11310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11310_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 1e-88; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 233 - 449
Target Start/End: Complemental strand, 1951848 - 1951635
Alignment:
| Q |
233 |
ttgttggtgatccaagctgctcttgttaatattggcactctaggaacaaagcaagatttaataacaaagtaattccttggaagtctgcagcagcttacat |
332 |
Q |
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| T |
1951848 |
ttgttggtgatccaagctgctcttgttaatattggcactctaggaacaaagcaagatttaataacaaagtaattccttggaagtctgcagcagc-----t |
1951754 |
T |
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| Q |
333 |
tacattatttgaaatgtttctctttcaagt---gtagcatagaccctcccaaagataatatcatcaaggaagttttgtggtatccccccactatcaattg |
429 |
Q |
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| T |
1951753 |
tacgttatttgaaatgtttctctttcaagtgtagtagcatagaccctcccaaagataatatcatcaaggaagttttgtggtat-cccccattatcaattg |
1951655 |
T |
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| Q |
430 |
gaataactaaatgtaactgt |
449 |
Q |
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| T |
1951654 |
gactaactaaatgtaactgt |
1951635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 9 - 103
Target Start/End: Complemental strand, 1951945 - 1951851
Alignment:
| Q |
9 |
agcagagagagtcaaggccaagttatctgcttgaaaagcatctctactctctattgctgggagagtacaacttgtcaaagcatgctattatatat |
103 |
Q |
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| T |
1951945 |
agcagacagagtcaaggccaagttatctgcttgaaaagcatctctactctctattgctgggagagtacaacttgtcaaagcatgctattatatat |
1951851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 353 - 405
Target Start/End: Original strand, 40631217 - 40631269
Alignment:
| Q |
353 |
tctttcaagtgtagcatagaccctcccaaagataatatcatcaaggaagtttt |
405 |
Q |
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| T |
40631217 |
tctttcaagtgtaacataaaccctcccaaatataatatcatcaaggaagtttt |
40631269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 13320610 - 13320567
Alignment:
| Q |
28 |
aagttatctgcttgaaaagcatctctactctctattgctgggag |
71 |
Q |
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||||||||||| || ||||||||||| ||||||||||||||||| |
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| T |
13320610 |
aagttatctgcctggaaagcatctctcctctctattgctgggag |
13320567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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