View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11310_low_2 (Length: 451)
Name: NF11310_low_2
Description: NF11310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11310_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 434
Target Start/End: Complemental strand, 366419 - 365999
Alignment:
| Q |
14 |
gaagatcatccagttcaggccatctttttatgtaaaactcagcattctcaaatcctagaatgtcctcccatatctggccaagagnnnnnnncaaatgaac |
113 |
Q |
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| T |
366419 |
gaagatcatccagttcaggccatctttttatgtaaaactcagcattctcaaatcctagaatgtcctcccatatctggccaagagaaaaaaacaaatgaac |
366320 |
T |
|
| Q |
114 |
aaacaaacacggtacgataccaagtttaggtaactggaaaccagatgtaacgatgaagtcgtcaagtccataacatttgagccactaccaatttcagtaa |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
366319 |
aaacaaacacggtacgataccaagtttaggtaactggaaaccagatgtgacggttaagtcatcaaatccataacatttgagccactaccaatttcagtaa |
366220 |
T |
|
| Q |
214 |
tgcataaagggatcgagttatttgaataaaaacctgtgcaaggccaggctgcagagcacactgaatcatcaaacgtccaatcacatcatgtgcaacaact |
313 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
366219 |
tgcataaagggatcaagttatttgaataaaaacctgtgcaaggccaggctgtagagcacactgaatcatcaaacgtccaatcacatcatgtgcaacaact |
366120 |
T |
|
| Q |
314 |
gtttcaatgagttctccaccaacaagtttcactaggggttcattgtctaggtcgctcatctctacaacaacatgcccccttaagccctcctttacaccag |
413 |
Q |
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| T |
366119 |
gtttcaatgagttctccaccaacaagtttcactaggggttcattgtctaggtcgctcatctctacaacaacatgcccccttaagccctcctttacaccag |
366020 |
T |
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| Q |
414 |
ctaagctaagaacaactctca |
434 |
Q |
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| T |
366019 |
ctaagctaagaacaactctca |
365999 |
T |
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Back To:
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Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 320
Target Start/End: Original strand, 48751585 - 48751660
Alignment:
| Q |
245 |
acctgtgcaaggccaggctgcagagcacactgaatcatcaaacgtccaatcacatcatgtgcaacaactgtttcaa |
320 |
Q |
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| T |
48751585 |
acctgtgcaagtccaggctgccgagcacattgaatcatcaagcgaccaatgacgtcatgagctacaacagtttcaa |
48751660 |
T |
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