View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11310_low_3 (Length: 397)
Name: NF11310_low_3
Description: NF11310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11310_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 19 - 387
Target Start/End: Complemental strand, 24345907 - 24345539
Alignment:
| Q |
19 |
tcaacttcaaacccctcaaatcaattcacacgccccccatttccatttgctcacccctcatttcaaaacgccacactctcaccgttagagcttcatcagc |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24345907 |
tcaacttcaaacccctcaaatcaattcacacgccccccatttccattttctcacccctcatttcaaaacgccacactctcaccgttagagcttcatcagc |
24345808 |
T |
|
| Q |
119 |
ctccatcacaccagcttcatctccatcaccagctccgccaccagctcaaccatggcaaggcgccgccattaaaccactcatagcatcaatcctcaccgga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24345807 |
ctccatcacaccagcttcatctccatcaccagctccgccaccagctcaaccttggcaaggcgccgccattaaaccacttatagcatcaatcctcaccgga |
24345708 |
T |
|
| Q |
219 |
gtaatcctctggtttgttccaactcctgaaggtgtatcccgcaacgcgtggcaactactcgcaatcttcctcggaacaatcgtcggaatcatcacacaac |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
24345707 |
gtaatcctctggtttgttccaactcctgaaggtgtatcccgcaacgcgtggcaactactcgcaatcttcctcggaacaatcgttggaatcatcacacaac |
24345608 |
T |
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| Q |
319 |
cactcccactcggcgctgtggcaattctaggtttaggagtttcagttctcaccaaaaccctaccctttg |
387 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24345607 |
cactcccactcggcgctgtggcaattctaggtttaggagtttcagttctcaccaaaacccttccctttg |
24345539 |
T |
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