View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11310_low_4 (Length: 365)
Name: NF11310_low_4
Description: NF11310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11310_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 19 - 355
Target Start/End: Original strand, 2930722 - 2931058
Alignment:
| Q |
19 |
aatcagactcaggataataacgtgacagtgaagagtgtctcaaaattccagcaacacaattctcattagaaataatatcctctgtttcttcatcttcata |
118 |
Q |
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| T |
2930722 |
aatcagactcaggataataacgtgacagtgaagagtgtctcaaaattccagcaacacaattctcattagaaataatatcctctgtttcttcatcttcata |
2930821 |
T |
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| Q |
119 |
tataacctccaatggtgctttcacgttccattcaacaaaagactcatcaagaaacgaatttgattcaaaacccatttttgatttcaacttttcttcataa |
218 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2930822 |
tataacatccaatggtgctttcacgttccattcaacaaaagactcatcaagaaacgaatttgattcaaaacccatttttgatttcaacttttcttcataa |
2930921 |
T |
|
| Q |
219 |
tttctcgagacccacttgtaaatttggtcaagagaatcattttcctctgttttcccctgtttttcatctccgttttcttctttggtaacggattctaatt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
2930922 |
tttctcgagacccacttgtaaatttggtcaagagaatcattttcctctgttttcccctgtttttcatctctgttttcttcattggtaacggattctaatt |
2931021 |
T |
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| Q |
319 |
caccaaatttttccttttcttcactcttagatctctg |
355 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
2931022 |
caccaaatttttccttttcttcactcttagatctctg |
2931058 |
T |
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