View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11310_low_5 (Length: 348)
Name: NF11310_low_5
Description: NF11310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11310_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 13 - 339
Target Start/End: Original strand, 42933217 - 42933543
Alignment:
| Q |
13 |
caacaacatcatctcaagaaacggcaacggaacaacacaagcttgtgctgcatgtaaatatcaacgtaggaagtgtggtacatcctgcattctcgcacca |
112 |
Q |
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| T |
42933217 |
caacaacatcatctcaagaaacggcaacggaacaacacaagcttgtgctgcatgtaaatatcaacgtaggaagtgtggtacatcctgcattctcgcacca |
42933316 |
T |
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| Q |
113 |
tattttcctcacgatcgtcaaaaacaattcttaaacgctcataaattgtttggtgttggtaaaatcaccaacatgatcaagaatgttccacctcatctta |
212 |
Q |
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| T |
42933317 |
tattttcctcacgatcgtcaaaaacaattcttaaacgctcataaattgtttggtgttggtaaaatcaccaatatgatcaagaatgttccacctcatctta |
42933416 |
T |
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| Q |
213 |
gagatcatactatgagttctattatttttcaatctgatatgcgtgctatggatcctgttggtggttgttatagattcattcaacagcttcaatctcaata |
312 |
Q |
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| T |
42933417 |
gagatcataccatgagttctattatttttcaatctgatatgcgtgctatggatcctgttggtggttgttatagattcattcaacagcttcaatctcaata |
42933516 |
T |
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| Q |
313 |
tgaattttatcaagctgagcttcatct |
339 |
Q |
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| T |
42933517 |
tgaattttatcaagctgagcttcatct |
42933543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 236 - 310
Target Start/End: Complemental strand, 5747366 - 5747292
Alignment:
| Q |
236 |
atttttcaatctgatatgcgtgctatggatcctgttggtggttgttatagattcattcaacagcttcaatctcaa |
310 |
Q |
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| T |
5747366 |
atttttcaatctgatatgcgggctaatgatcctgttggtggttgttataaatatattcaagatcttcaagctcaa |
5747292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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