View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11310_low_7 (Length: 287)
Name: NF11310_low_7
Description: NF11310
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11310_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 13 - 273
Target Start/End: Complemental strand, 6968885 - 6968625
Alignment:
| Q |
13 |
caaaggatgagattcaatactcagataattcattgccaacattttgaatccatcaaaaccacagtaagacaactcaatatgcatgtccattcgtccacga |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6968885 |
caaaggatgagattcaatactcagataattcattgccaacattttgaatccatcaaaaccacagtaagacaactcaatatgcatgtccattcgtccacga |
6968786 |
T |
|
| Q |
113 |
cgaatcaaagcttgatcaagtttctccacatagttagtagtaaatataatcaatctctcaccagtactagcagaccaaatcccatcaatgaaattcaaca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6968785 |
cgaatcaaagcttgatcaagtttctccacatagttagtagtaaatataatcaatctctcaccagtactagcagaccaaatcccatcaatgaaattcaaca |
6968686 |
T |
|
| Q |
213 |
atccagaaagtgttacctgacttgctttgttcttttctttatctgctgcttgtaatccctg |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6968685 |
atccagaaagtgttacctgacttgctttgttcttttctttatctgctgcttgtaatccctg |
6968625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 234
Target Start/End: Complemental strand, 2178170 - 2177955
Alignment:
| Q |
19 |
atgagattcaatactcagataattcattgccaacattttgaatccatcaaaaccacagtaagacaactcaatatgcatgtccattcgtccacgacgaatc |
118 |
Q |
| |
|
||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||| |||| ||| || ||| |||||||||||| ||| |||| ||| |
|
|
| T |
2178170 |
atgagattcaagactcagatacttcgttgccaacattttgaatccatcaaaacaacaataaggcaattcgataagcatgtccattcttcctcgacaaatt |
2178071 |
T |
|
| Q |
119 |
aaagcttgatcaagtttctccacatagttagtagtaaatataatcaatctctcaccagtactagcagaccaaatcccatcaatgaaattcaacaatccag |
218 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| | |
|
|
| T |
2178070 |
aaagcatgatcaagtttctccgcatagttagtagtgaatataattaacctctcaccagtactagctgaccaaatcccatcaatgaaattcaacaatcctg |
2177971 |
T |
|
| Q |
219 |
aaagtgttacctgact |
234 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
2177970 |
gaagtgttatctgact |
2177955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 1000375 - 1000502
Alignment:
| Q |
13 |
caaaggatgagattcaatactcagataattcattgccaacattttgaatccatcaaaaccacagtaagacaactcaat----atgcatgtccattcgtcc |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
1000375 |
caaaggatgagattcaatactcagataactcattgctagcattttgaatccatcaaaaccacaataagacaactcaatatgcatgcatgtccattcgtcc |
1000474 |
T |
|
| Q |
109 |
acgacgaatcaaagcttgatcaagtttc |
136 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
1000475 |
acgacgaatcaaagcttgatcaagtttc |
1000502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 51316192 - 51316361
Alignment:
| Q |
19 |
atgagattcaatactcagataattcattgccaacattttgaatccatcaaaaccacagtaagacaactcaatatgcatgtcc-----attcgtccacgac |
113 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| |||| || | || |
|
|
| T |
51316192 |
atgagattcaagactcagataattcattgccaacattttgaatccatcaaaaccacaataagacaattcaatatgcatatccattatattcttcatctac |
51316291 |
T |
|
| Q |
114 |
gaatcaaagcttgatcaagtttctccacatagttagtagtaaatataatcaatctctcaccagtactagc |
183 |
Q |
| |
|
|||| | ||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
51316292 |
gaattagagcatgattaagtttctccacatagttagtagtaaatataatcaatctctcatgagtactagc |
51316361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 2829194 - 2829147
Alignment:
| Q |
182 |
gcagaccaaatcccatcaatgaaattcaacaatccagaaagtgttacc |
229 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||| |||||| |
|
|
| T |
2829194 |
gcagaccaaatcccatcaataaaattcaacaaaccagaaagagttacc |
2829147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 2833023 - 2833073
Alignment:
| Q |
185 |
gaccaaatcccatcaatgaaattcaacaatccagaaagtgttacctgactt |
235 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||| ||||||| |||| |
|
|
| T |
2833023 |
gaccaaattccatcaatgaaattcaacaaaccagaaagagttaccttactt |
2833073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University