View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11311_high_3 (Length: 495)
Name: NF11311_high_3
Description: NF11311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11311_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 6118741 - 6119024
Alignment:
| Q |
1 |
tcactagtgtcattttacctttcatatttcctatagagaagagagagtatagtgcaagagaaaccatcagtgtgattgacaggtagtgatcatcatcagt |
100 |
Q |
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| T |
6118741 |
tcactagtgtcattttacctttcatatttcctatagagaagagagagtatagtgcaagagaaaccatcagtgtgattgacaggtagtgatcatcatcagt |
6118840 |
T |
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| Q |
101 |
ttttggttgtttagcatccatctgttcttgtaatatctgctcatttatttaggtatatattcttgaactattattttcaagtatgaatttaaccttcgaa |
200 |
Q |
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| T |
6118841 |
ttttggttgtttagcatccatctgttcttgta---tctgctcattt----aggtatatattcttgaactattattttcaagtatgaatttaatcttcaaa |
6118933 |
T |
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| Q |
201 |
aaattatatgaaataatcactggatatgaatctagtaatattgtatgcaattaatctgctttacacgaccacctgattctattcacttgtc |
291 |
Q |
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| T |
6118934 |
aaattgtatgaaataatcactggatatgaatctagtaatattgtatgcaattaatctgctttacacgaccacctgattctattcacttgtc |
6119024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 392 - 461
Target Start/End: Complemental strand, 32623610 - 32623541
Alignment:
| Q |
392 |
atcaactaaatgattggccgatcaatcttattttcaaaaccttaatctttagtctatggatttattttgt |
461 |
Q |
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| T |
32623610 |
atcaactaattgattgaccgatcaatcttattttgaaaaccttaattatttgtgtatgaatttattttgt |
32623541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 392 - 478
Target Start/End: Original strand, 6150160 - 6150246
Alignment:
| Q |
392 |
atcaactaaatgattggccgatcaatcttattttcaaaaccttaatctttagtctatggatttattttgtctatatgattttgatgt |
478 |
Q |
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| T |
6150160 |
atcaactaattgattcactgataaatcttatattcaaaaccttagtcttttgtgtatctatttattttgtccgtgtgattttgatgt |
6150246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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