View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11311_low_1 (Length: 1082)
Name: NF11311_low_1
Description: NF11311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11311_low_1 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 903; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 903; E-Value: 0
Query Start/End: Original strand, 1 - 1066
Target Start/End: Complemental strand, 51238418 - 51237365
Alignment:
| Q |
1 |
catgataaacacacgaagacattcacataaa-taattgnnnnnnntggaaggaccacttatagcaacattaaacaaactcatctgaaaactagttattat |
99 |
Q |
| |
|
|||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51238418 |
catgataaacacactaagacattcacataaaataattgaaaaaaatggaaggaccacttatagcaacattaaacaaactcatctgaaaactagttattat |
51238319 |
T |
|
| Q |
100 |
aaatttcactccaaatcacatcttccatggtgtgcaagcaaggaggttgaaacatccatgaagtatcaatggaatccataaatacaaactcctttccaaa |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51238318 |
aaatttcactccaaatcacatcttccatggtgtgcaagcaaggaggctgaaacatccatgaagtatcaatggaatccataaatacaaactcctttccaaa |
51238219 |
T |
|
| Q |
200 |
atctccaacgtttcccaaacgaggaagctcaattatctcactcaattcatatgaagttgttgaagacggaaactccatgtgagctgctttagtatcggct |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || | ||| |
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| T |
51238218 |
atctccaacgtttcccaaacgaggaagctcaattatctcactcaattcatatgaagttgttgaagatggaaactccatgtgagctgctttattagctgct |
51238119 |
T |
|
| Q |
300 |
gcttgaacatcgcggggagcaagtgaagccggtcgaggaagcaagtttgctaactcagggaagttgagaatggcggcacttccttttatactgagagcag |
399 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51238118 |
gcttgaacatctcggggagcaagtgaagccggtcgaggaagcaagtttgctaactcagggaagttgagaatggcggcacttccttttatactgagagcag |
51238019 |
T |
|
| Q |
400 |
ctacatcgtgtgctcgagcagccatttctggtgtgggaaatgtgccgagccatattcgggattttttcttaggctcacgaatttcggacacccattttcc |
499 |
Q |
| |
|
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51238018 |
ctacatcgtgtgctcgagctgccatttccggtgtgggaaatgtgccgagccatattcgggattttttcttaggctcacgaatttcggacacccattttcc |
51237919 |
T |
|
| Q |
500 |
ccaatttcgcattcggacaccacgatataccggatgcttgcttgtgtctcttatgccttttatttgttgggattgtggtgatggtggtggtggtgaattt |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51237918 |
ccaatttcgcattcggacaccacgatataccggatgcttgcttgtgtctcttatgccttttatttgttgggattgtggtgatggtggtggtggtgaattt |
51237819 |
T |
|
| Q |
600 |
gagctacttttagtttctgagttattatgaggttgttcaatagtactattcatattgtttgg-tttggcaatgtgaaggagagaaataaaaagaaattaa |
698 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||| |
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|
| T |
51237818 |
gagctacttttagtttctgagttattatgaggttgttcaatagtactattcatattgtttggttttggcaatgggaaggagagaaataaaaggaaattaa |
51237719 |
T |
|
| Q |
699 |
tgggccgtgaccgttttttccgtcacttgccaatcacacttataaaggttgagttgatatcgaaaagagtagtatagtgtaaaggacggatctgggaccc |
798 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
51237718 |
tgggccgtgaccgttttttccgtcacttgccaatcacacttataaaggttgagttgatattgaaaagagtagtatagtgtaaaggacggacctgggaccc |
51237619 |
T |
|
| Q |
799 |
acgatagaaaattagtcataaattttacaacctctgtactcgaaataagttgaatctcaaaaaagactaggatattaggtaagagaattttgtaacttta |
898 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||||||| |||||||||||||||| ||||||||| |
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|
| T |
51237618 |
acgatagaaaattagtcataaatttta----------actcaaaataagttgaatctcaaaaaacactaggattttaggtaagagaatttcgtaacttta |
51237529 |
T |
|
| Q |
899 |
aaaatcatatcaatgtaaaacttctaacaacaatcctctagtgctaacattaattaccatgtattccggcaattgaagaacatacattctgctccactac |
998 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
51237528 |
aaaatcatatcaatgtaaaacttctaacaacaatcctctagtgctaac----attaccatgcattccggcaattgaagaacatacattctgctccactac |
51237433 |
T |
|
| Q |
999 |
aagtaagatgtagatcaatccttcaaaagagtaaggtgtagatcaagaataaaatatgatggataact |
1066 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
51237432 |
aagtaagatgtagatcaatccttcaaaagagtaaggtgtagatcaataataaaatatgatggataact |
51237365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 395 - 507
Target Start/End: Original strand, 505544 - 505656
Alignment:
| Q |
395 |
agcagctacatcgtgtgctcgagcagccatttctggtgtgggaaatgtgccgagccatattcgggattttttcttaggctcacgaatttcggacacccat |
494 |
Q |
| |
|
|||||||||||| ||||||| ||| |||||||| | ||| || |||| || |||||||||| ||||||||||| ||||||||||| || |||| || |
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|
| T |
505544 |
agcagctacatcatgtgctctagctgccatttcagctgtagggtatgttccaagccatattcttgattttttctttggctcacgaatctcacacacaaat |
505643 |
T |
|
| Q |
495 |
tttccccaatttc |
507 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
505644 |
ttcccccaatttc |
505656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 399 - 508
Target Start/End: Complemental strand, 4268757 - 4268648
Alignment:
| Q |
399 |
gctacatcgtgtgctcgagcagccatttctggtgtgggaaatgtgccgagccatattcgggattttttcttaggctcacgaatttcggacacccattttc |
498 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| | ||||| || ||||| |||| |||||||| || || || ||||| || |||||||||| |
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|
| T |
4268757 |
gctacatcgtgtgctctagctgccatttctggtgttgagaatgttcctagccagattcttgattttttgcgtggttcgcggatttcagatacccattttc |
4268658 |
T |
|
| Q |
499 |
cccaatttcg |
508 |
Q |
| |
|
|||| ||||| |
|
|
| T |
4268657 |
cccagtttcg |
4268648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 411 - 526
Target Start/End: Original strand, 3996397 - 3996512
Alignment:
| Q |
411 |
gctcgagcagccatttctggtgtgggaaatgtgccgagccatattcgggattttttcttaggctcacgaatttcggacacccattttccccaatttcgca |
510 |
Q |
| |
|
|||||||| ||||| || ||||| ||| | ||||| ||||| |||| ||||||||||| ||||| | |||||| || ||||||||||||||| | |||| |
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|
| T |
3996397 |
gctcgagctgccatctcgggtgttggataagtgcctagccaaattcttgattttttcttgggctctctaatttctgaaacccattttccccaactacgca |
3996496 |
T |
|
| Q |
511 |
ttcggacaccacgata |
526 |
Q |
| |
|
||| || |||||||| |
|
|
| T |
3996497 |
ttcttactccacgata |
3996512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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