View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11311_low_11 (Length: 248)
Name: NF11311_low_11
Description: NF11311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11311_low_11 |
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| [»] chr6 (12 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 148; Significance: 3e-78; HSPs: 12)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 14025601 - 14025841
Alignment:
| Q |
8 |
cagagaatttgtttttggacagatcaataaccatgggaccttggagaaatggtggaatgggtccttcaaactcatttgatgaaagagatnnnnnnncaca |
107 |
Q |
| |
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||||||||||||||||||||| |||| |||| | | ||||| |||||||||||||| || |||||||| |||||||||||||||||| ||| |
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| T |
14025601 |
cagagaatttgtttttggacaaatcagtaactgtagaaccttttagaaatggtggaataggcccttcaaattcatttgatgaaagagataaaacagaaca |
14025700 |
T |
|
| Q |
108 |
atgattttttacttgaagatttggaattgatcctttgagattattgtttgaaacgttgatgttgttgcactcttgtgatgatagtttagcccaaaaccac |
207 |
Q |
| |
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| ||||||| |||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14025701 |
acgatttttgacttgaagatttggaattaatcctttgagattattgtttgaaatgttgatgttgttgcaccattgtgatgatagtttagcccaaaaccac |
14025800 |
T |
|
| Q |
208 |
tctggaacattatctgaaattccagccttcgaaatatcaag |
248 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
14025801 |
tctggaacattatctgaaattccagccttcgaaatatcaag |
14025841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 14110796 - 14111036
Alignment:
| Q |
8 |
cagagaatttgtttttggacagatcaataaccatggga-ccttggagaaatggtggaatgggtccttcaaactcatttgatgaaagagatnnnnnnncac |
106 |
Q |
| |
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||||||| |||||||||||||| |||||||| |||||| ||||| ||||||||||||||||| |||||||| |||||| ||||||||||| | |
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| T |
14110796 |
cagagaacttgtttttggacaggtcaataac-atgggaaccttgtagaaatggtggaatgggcccttcaaattcatttaatgaaagagataaactagagc |
14110894 |
T |
|
| Q |
107 |
aatgattttttacttgaagatttggaattgatcctttgagattattgtttgaaacgttgatgttgttgcactcttgtgatgatagtttagcccaaaacca |
206 |
Q |
| |
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||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| |
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| T |
14110895 |
aataattttttacttgaagatttggaattattcctttgagattattgtttgaaacgttgatgctcctgcacttttgtgatgatagtttagcccaaaacca |
14110994 |
T |
|
| Q |
207 |
ctctggaacattatctgaaattccagccttcgaaatatcaag |
248 |
Q |
| |
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||| ||||||||||||||||||||||| || ||||||||||| |
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|
| T |
14110995 |
ctccggaacattatctgaaattccagcattagaaatatcaag |
14111036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 13 - 248
Target Start/End: Original strand, 13932673 - 13932908
Alignment:
| Q |
13 |
aatttgtttttggacagatcaataaccatgggaccttggagaaatggtggaatgggtccttcaaactcatttgatgaaagagatnnnnnnncacaatgat |
112 |
Q |
| |
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|||||||||||||||| |||||||| | |||||| | ||||| |||||| || |||||||| |||||||||||||||||| ||| |||| |
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| T |
13932673 |
aatttgtttttggacaaatcaataagtgcagaaccttgtaaaaatgctggaataggcccttcaaattcatttgatgaaagagataaaagagaacagtgat |
13932772 |
T |
|
| Q |
113 |
tttttacttgaagatttggaattgatcctttgagattattgtttgaaacgttgatgttgttgcactcttgtgatgatagtttagcccaaaaccactctgg |
212 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
13932773 |
ttttgacttgaagatttggaattgaacctttgagattattgtttgaaatattgatgctgttgcattcttgtgatgatagtttagcccaaaaccactctgg |
13932872 |
T |
|
| Q |
213 |
aacattatctgaaattccagccttcgaaatatcaag |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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| T |
13932873 |
aacattatctgaaattccagccttcgaaatatcaag |
13932908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 13892747 - 13892509
Alignment:
| Q |
10 |
gagaatttgtttttggacagatcaataaccatgggaccttggagaaatggtggaatgggtccttcaaactcatttgatgaaagagatnnnnnnncacaat |
109 |
Q |
| |
|
||||||||||||||||||| ||||||| | | ||||| |||||||||||||| || |||||||| |||||||||||||||||| ||||| |
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| T |
13892747 |
gagaatttgtttttggacaagtcaataagtgtagaaccttttagaaatggtggaataggcccttcaaattcatttgatgaaagagataaaatagaacaat |
13892648 |
T |
|
| Q |
110 |
gattttttacttgaagatttggaattgatcctttgagattattgtttgaaacgttgatgttgttgcactcttgtgatgatagtttagcccaaaaccactc |
209 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | ||||||||| | |||||| |||||||||||||||||| |
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|
| T |
13892647 |
aatttttgacttgaagatttggaattaatcctttgagattattgtttgaaatgttgatgcttctgcactcttttaatgataatttagcccaaaaccactc |
13892548 |
T |
|
| Q |
210 |
tggaacattatctgaaattccagccttcgaaatatcaag |
248 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||||| |
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| T |
13892547 |
tggaacattatctgaaattccagcattagaaatatcaag |
13892509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 8 - 248
Target Start/End: Original strand, 14015470 - 14015712
Alignment:
| Q |
8 |
cagagaatttgtttttggacagatcaataaccatgggaccttggagaaatggtggaatgggtccttcaaactcatttgatgaaagagatnnnnnnncaca |
107 |
Q |
| |
|
||||||||||||||||||||| |||||||| | |||||| ||||||| |||||| || |||||||| |||||||||||||||||| | | |
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|
| T |
14015470 |
cagagaatttgtttttggacaaatcaataagttcagaaccttgtagaaatgctggaataggcccttcaaattcatttgatgaaagagatataaaaaaaaa |
14015569 |
T |
|
| Q |
108 |
a--tgattttttacttgaagatttggaattgatcctttgagattattgtttgaaacgttgatgttgttgcactcttgtgatgatagtttagcccaaaacc |
205 |
Q |
| |
|
| | | |||| |||||||||||||||||||| |||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||| |
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|
| T |
14015570 |
aaattaattttgacttgaagatttggaattgaacctttgagattattgtttgaaatgttgatgcggtagcactcttgtgatgatagtttagcccaaaacc |
14015669 |
T |
|
| Q |
206 |
actctggaacattatctgaaattccagccttcgaaatatcaag |
248 |
Q |
| |
|
||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
14015670 |
actctggaatattatctgaaattccagcattcgaaatatcaag |
14015712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 52 - 248
Target Start/End: Original strand, 14047694 - 14047890
Alignment:
| Q |
52 |
agaaatggtggaatgggtccttcaaactcatttgatgaaagagatnnnnnnncacaatgattttttacttgaagatttggaattgatcctttgagattat |
151 |
Q |
| |
|
||||| |||||| ||| |||||||| |||||||||||||||||| ||| ||| |||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
14047694 |
agaaaaggtggagtggacccttcaaattcatttgatgaaagagataaaaaagaacattgacttttggcttgaagatttggaattaatcctttgagattat |
14047793 |
T |
|
| Q |
152 |
tgtttgaaacgttgatgttgttgcactcttgtgatgatagtttagcccaaaaccactctggaacattatctgaaattccagccttcgaaatatcaag |
248 |
Q |
| |
|
||||| ||| ||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
14047794 |
tgtttaaaatgttcatgttgctgcactctggtgatgatagtttagcccaaaaccactctggaacattatctgaaattccagcattcgaaatatcaag |
14047890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 13875044 - 13874806
Alignment:
| Q |
9 |
agagaatttgtttttggacagatcaataaccatgggaccttggagaaatggtggaatgggtccttcaaactcatttgatgaaagagatnnnnnnncacaa |
108 |
Q |
| |
|
|||||||||||||||||||| ||||||| | | |||| ||||||||||||||||| |||||||| | |||||||| ||||||| |||| |
|
|
| T |
13875044 |
agagaatttgtttttggacaaatcaatagatacagaacctctgagaaatggtggaatggagccttcaaattgatttgatgcaagagataaaaaagaacaa |
13874945 |
T |
|
| Q |
109 |
tgattttttacttgaagatttggaattgatcctttgagattattgtttgaaacgttgatgttgttgcactcttgtgatgatagtttagcccaaaaccact |
208 |
Q |
| |
|
||||||||||| |||||||| |||||| ||||||||||||| |||| ||||| |||||| | ||||||||||||||||||||||||||||||||||||| |
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|
| T |
13874944 |
tgattttttacatgaagattcggaattaatcctttgagattgttgtatgaaatgttgattgtcttgcactcttgtgatgatagtttagcccaaaaccact |
13874845 |
T |
|
| Q |
209 |
ctggaacattatctgaaattccagccttcgaaatatcaa |
247 |
Q |
| |
|
| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
13874844 |
cgggaacattatctgaaattccagaattagaaatatcaa |
13874806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 52 - 248
Target Start/End: Complemental strand, 13472698 - 13472502
Alignment:
| Q |
52 |
agaaatggtggaatgggtccttcaaactcatttgatgaaagagatnnnnnnncacaatgattttttacttgaagatttggaattgatcctttgagattat |
151 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||| | |
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|
| T |
13472698 |
agaaatggtggaatggacccttcaaattcatttgatgaaagatataaaaaagaacaatgattttttacttgaagatttggaattaatcctttgagattgt |
13472599 |
T |
|
| Q |
152 |
tgtttgaaacgttgatgttgttgcactcttgtgatgatagtttagcccaaaaccactctggaacattatctgaaattccagccttcgaaatatcaag |
248 |
Q |
| |
|
| | |||| |||||| | ||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||| | || ||||||||||| |
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|
| T |
13472598 |
tataggaaatgttgattctagagcagtcttgggatgatagtttagaccaaaaccactctggaacattatctgaaattccaccattagaaatatcaag |
13472502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 12 - 248
Target Start/End: Original strand, 14084991 - 14085227
Alignment:
| Q |
12 |
gaatttgtttttggacagatcaataaccatgggaccttggagaaatggtggaatgggtccttcaaactcatttgatgaaagagatnnnnnnncacaatga |
111 |
Q |
| |
|
|||||| |||||||||||||||||| |||| |||| ||||||||||||||||| |||||||| ||||||||||| ||| || ||||| | |
|
|
| T |
14084991 |
gaatttatttttggacagatcaatatttatggaacctctaagaaatggtggaatgggaccttcaaattcatttgatgacagaaataaaaaagaacaataa |
14085090 |
T |
|
| Q |
112 |
ttttttacttgaagatttggaattgatcctttgagattattgtttgaaacgttgatgttgttgcactcttgtgatgatagtttagcccaaaaccactctg |
211 |
Q |
| |
|
||| ||| || ||||| |||||||||||||||| ||| |||| |||| |||||| | |||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
14085091 |
tttcttatgtggagattcggaattgatcctttgaaattgttgtaagaaaggttgattgtcctgcactcttgtgatgatagttttgcccaaaaccactctg |
14085190 |
T |
|
| Q |
212 |
gaacattatctgaaattccagccttcgaaatatcaag |
248 |
Q |
| |
|
||| ||||||||||| |||||| || ||||||||||| |
|
|
| T |
14085191 |
gaatattatctgaaactccagcattagaaatatcaag |
14085227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 52 - 245
Target Start/End: Complemental strand, 13862531 - 13862338
Alignment:
| Q |
52 |
agaaatggtggaatgggtccttcaaactcatttgatgaaagagatnnnnnnncacaatgattttttacttgaagatttggaattgatcctttgagattat |
151 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||| ||| ||||||||||||| | |||||||||||||||||| ||||||| |
|
|
| T |
13862531 |
agaaatggtggaatgggcccttcaaaatcatttgatgaaagagataaaagagaacagtgattttttacttttaaatttggaattgatcctttaagattat |
13862432 |
T |
|
| Q |
152 |
tgtttgaaacgttgatgttgttgcactcttgtgatgatagtttagcccaaaaccactctggaacattatctgaaattccagccttcgaaatatc |
245 |
Q |
| |
|
||||||||| ||| || | |||||| ||| ||||||| ||| ||||||||||||| |||||||||||||||||| |||| || |||||||| |
|
|
| T |
13862431 |
tgtttgaaatgtttattgtattgcacatttgcaatgatagattatcccaaaaccactcaggaacattatctgaaatttcagcattagaaatatc |
13862338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 8 - 161
Target Start/End: Original strand, 13912143 - 13912296
Alignment:
| Q |
8 |
cagagaatttgtttttggacagatcaataaccatgggaccttggagaaatggtggaatgggtccttcaaactcatttgatgaaagagatnnnnnnncaca |
107 |
Q |
| |
|
||||||| ||||||||||||| ||||||||| | | ||||| |||||||||||||||||| |||||||| |||||||||||||| ||| ||| |
|
|
| T |
13912143 |
cagagaacttgtttttggacaaatcaataactgtagaacctttgagaaatggtggaatgggcccttcaaattcatttgatgaaagtgataaaacagaaca |
13912242 |
T |
|
| Q |
108 |
atgattttttacttgaagatttggaattgatcctttgagattattgtttgaaac |
161 |
Q |
| |
|
| |||||||||||||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
13912243 |
aagattttttacttgaagatttggaattaagcctttgagattattgtttgaaac |
13912296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 13928814 - 13928899
Alignment:
| Q |
163 |
ttgatgttgttgcactcttgtgatgatagtttagcccaaaaccactctggaacattatctgaaattccagccttcgaaatatcaag |
248 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
13928814 |
ttgatgctgctgcactcttgtgatgatagtttagcccaaaaccactcgggaacattatctgaaattccagcattagaaatatcaag |
13928899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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