View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11311_low_13 (Length: 223)
Name: NF11311_low_13
Description: NF11311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11311_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 44349680 - 44349477
Alignment:
| Q |
1 |
caatctgaaggtgttcgttgttacattaagaagttcaataacattgttaatgactgttatgactttttcaagtcagttagtggtatggattcaaagcctt |
100 |
Q |
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| T |
44349680 |
caatctgaaggtgttcgttgttacattaagaagttcaataacattgttaatgactgttatgactttttcaagtcagttagtggtatggattcaaagcctt |
44349581 |
T |
|
| Q |
101 |
tgtctaatcctttgagtgtatacatttttaatcaattctattattttcatcattcattttcatgttaattaattccagtgcttcaagagtacaagggaaa |
200 |
Q |
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| T |
44349580 |
tgtctaatcttttgagtgtataca-ttttaatcaattc---tattttcatcattcattttcatg----ttaattccagtgcttcaagagtacatgggaaa |
44349489 |
T |
|
| Q |
201 |
agctaggttctt |
212 |
Q |
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|||||||||||| |
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| T |
44349488 |
agctaggttctt |
44349477 |
T |
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