View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11311_low_17 (Length: 201)
Name: NF11311_low_17
Description: NF11311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11311_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 181; Significance: 5e-98; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 13874768 - 13874588
Alignment:
| Q |
1 |
aaatgtaagaccaagtttgcaagatcccaatcctatagtttgcaactgaaaaggcgggacccagttttcggtaaatctcaatactagtgaattgtcagac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13874768 |
aaatgtaagaccaagtttgcaagatcccaatcctatagtttgcaactgaaaaggcgggacccagttttcggtaaatctcaatactagtgaattgtcagac |
13874669 |
T |
|
| Q |
101 |
aagtctaattcctttaacattgacataccagaaaaatggaattcagagatcacaccatgtaaagagtttgaatccatccgt |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13874668 |
aagtctaattcctttaacattgacataccagaaaaatggaattcagagatcacaccatgtaaagagtttgaatccatccgt |
13874588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 1 - 172
Target Start/End: Original strand, 13932945 - 13933116
Alignment:
| Q |
1 |
aaatgtaagaccaagtttgcaagatcccaatcctatagtttgcaactgaaaaggcgggacccagttttcggtaaatctcaatactagtgaattgtcagac |
100 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| | | || |||||||| |||||||| ||||| |||||||||||| ||||||||||||| ||| |
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| T |
13932945 |
aaatgtaagaccaagtttgcttgatctcaatcctatactgttcagttgaaaaggtgggacccaattttcagtaaatctcaatgctagtgaattgtctgac |
13933044 |
T |
|
| Q |
101 |
aagtctaattcctttaacattgacataccagaaaaatggaattcagagatcacaccatgtaaagagtttgaa |
172 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| |
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|
| T |
13933045 |
aagtctaattcctttaacattgacataccagaaaaatgaaattcagagatcacaccattcatagagtttgaa |
13933116 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 157
Target Start/End: Original strand, 14025878 - 14026034
Alignment:
| Q |
1 |
aaatgtaagaccaagtttgcaagatcccaatcctatagtttgcaactgaaaaggcgggacccagttttcggtaaatctcaatactagtgaattgtcagac |
100 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| | | || |||||||| |||||||| ||||| |||||| ||||| | ||||||||||||||| |
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| T |
14025878 |
aaatgtaagaccaagtttgcatgatctcaatcctatattgtacagttgaaaaggtgggacccaattttcagtaaatgtcaatgcaagtgaattgtcagac |
14025977 |
T |
|
| Q |
101 |
aagtctaattcctttaacattgacataccagaaaaatggaattcagagatcacacca |
157 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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|
| T |
14025978 |
aagtctaattcctttaacattgacataccagaaaaatgaaattctgagatcacacca |
14026034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 14111073 - 14111225
Alignment:
| Q |
1 |
aaatgtaagaccaagtttgcaagatcccaatcctatagtttgcaactgaaaaggcgggacccagttttcggtaaatctcaatactagtgaattgtcagac |
100 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| | || | ||||| ||||||||||||||||| |||||| ||||| ||||||||||||||||| |
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|
| T |
14111073 |
aaatgtaagaccaagtttgcatgatctcaatcctataatgtgaagttgaaatggcgggacccagttttcagtaaatgtcaatgctagtgaattgtcagac |
14111172 |
T |
|
| Q |
101 |
aagtctaattcctttaacattgacataccagaaaaatggaattcagagatcac |
153 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |
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|
| T |
14111173 |
aagtctaattcctttaacatcgacataccagaaaaatgaaattcagatatcac |
14111225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 10 - 181
Target Start/End: Original strand, 14085273 - 14085444
Alignment:
| Q |
10 |
accaagtttgcaagatcccaatcctatagtttgcaactgaaaaggcgggacccagttttcggtaaatctcaatactagtgaattgtcagacaagtctaat |
109 |
Q |
| |
|
|||||||||||| ||||||||||||||| | || ||||||||||||||||| ||||||| ||| || ||| ||||| |||||| |||||||||||| |
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|
| T |
14085273 |
accaagtttgcaggatcccaatcctataatgcccagttgaaaaggcgggacccatttttcggcaaaacttaatgctagtaaattgtaagacaagtctaac |
14085372 |
T |
|
| Q |
110 |
tcctttaacattgacataccagaaaaatggaattcagagatcacaccatgtaaagagtttgaatccatccgt |
181 |
Q |
| |
|
|||| || |||||||||||||||||||||||| |||||||||||||||| |||||||||||||| ||||||| |
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|
| T |
14085373 |
tcctctagcattgacataccagaaaaatggaagtcagagatcacaccatttaaagagtttgaatgcatccgt |
14085444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 181
Target Start/End: Complemental strand, 13862298 - 13862118
Alignment:
| Q |
1 |
aaatgtaagaccaagtttgcaagatcccaatcctatagtttgcaactgaaaaggcgggacccagttttcggtaaatctcaatactagtgaattgtcagac |
100 |
Q |
| |
|
||||||| | || ||| |||| ||||||||||||||||| | || |||||||| || ||||| |||||| ||||||||||| ||||||||||| | ||| |
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| T |
13862298 |
aaatgtaggtccgagtatgcaggatcccaatcctatagtgtccagttgaaaaggtggcacccaattttcgttaaatctcaatgctagtgaattgcctgac |
13862199 |
T |
|
| Q |
101 |
aagtctaattcctttaacattgacataccagaaaaatggaattcagagatcacaccatgtaaagagtttgaatccatccgt |
181 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||| ||| |||||||| |
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|
| T |
13862198 |
aagtctaaatcctttaacattgacataccagaaaaatgaaattcagagatcacaccattcatagagttcgaacccatccgt |
13862118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 177
Target Start/End: Complemental strand, 13892472 - 13892296
Alignment:
| Q |
1 |
aaatgtaagaccaagtttgcaagatcccaatcctatagtttgcaactgaaaaggcgggacccagttttcggtaaatctcaatactagtgaattgtcagac |
100 |
Q |
| |
|
||||||| ||||||||||||| |||| |||||||||||| | ||| |||||||| |||||||| |||| || |||||||| | ||||||||||| ||| |
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|
| T |
13892472 |
aaatgtaggaccaagtttgcaggatctcaatcctatagtgtccaattgaaaaggagggacccaattttggggaaatctcattgctagtgaattgcttgac |
13892373 |
T |
|
| Q |
101 |
aagtctaattcctttaacattgacataccagaaaaatggaattcagagatcacaccatgtaaagagtttgaatccat |
177 |
Q |
| |
|
||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||| |
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|
| T |
13892372 |
aaggataattcctctaacattgacataccagaaaaatggaagtcagagatcacaccacttaaagagttcgaatccat |
13892296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 14015749 - 14015906
Alignment:
| Q |
1 |
aaatgtaagaccaagtttgcaagatcccaatcctatagtttgcaactgaaaaggcgggacccagttttcggtaaatctcaatactagtgaattgtcagac |
100 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||| ||| |||||||| |||||||| ||||| |||||| ||||| ||||||||||||| ||| |
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|
| T |
14015749 |
aaatgtaagaccaagtttgcatgatctcaatcctataccacgcagttgaaaaggtgggacccaattttcagtaaatgtcaatgctagtgaattgtctgac |
14015848 |
T |
|
| Q |
101 |
aagtctaattcctttaacattgacataccagaaaaatggaattcagagatcacaccat |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| || || |||||||||| |
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|
| T |
14015849 |
aagtctaattcctttaacattgacataccagcaaaatggaagtctgaaatcacaccat |
14015906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 5 - 168
Target Start/End: Original strand, 14047931 - 14048094
Alignment:
| Q |
5 |
gtaagaccaagtttgcaagatcccaatcctatagtttgcaactgaaaaggcgggacccagttttcggtaaatctcaatactagtgaattgtcagacaagt |
104 |
Q |
| |
|
||||||||||||||||| || |||| ||||||| |||| |||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||| | |
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|
| T |
14047931 |
gtaagaccaagtttgcatgaacccattcctatatcgtgcagttgaaaaggcgggacccagttttcggtaaatctcaatgctattgagttgtcagacaaat |
14048030 |
T |
|
| Q |
105 |
ctaattcctttaacattgacataccagaaaaatggaattcagagatcacaccatgtaaagagtt |
168 |
Q |
| |
|
||| | ||||||||||||||||| |||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
14048031 |
ataagtatcttaacattgacataccataaaaatggaagtcagagatcacaccacttaaagagtt |
14048094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 13472465 - 13472295
Alignment:
| Q |
1 |
aaatgtaagaccaagtttgcaagatcccaatcctatagtttgcaactgaaaaggcgggacccagttttcggtaaatctcaatactagtgaattgtcagac |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| | ||||| | || || |||||||||||||||||||| |||||||||||| | ||||| ||||||||| |
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|
| T |
13472465 |
aaatgtaagaccaagtttgcatgatcccaaatccatagtgtacagttggaaaggcgggacccagttttctgtaaatctcaatgccagtgagttgtcagac |
13472366 |
T |
|
| Q |
101 |
aagtctaattcctttaacattgacataccagaaaaatggaattcagagatcacaccatgtaaagagtttga |
171 |
Q |
| |
|
|| | ||| | |||||||||||||||||||||||||||| || |||||||| |||| ||||||||||| |
|
|
| T |
13472365 |
aaatataaatatcttaacattgacataccagaaaaatggaagtcggagatcacgccattcaaagagtttga |
13472295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 13928936 - 13929022
Alignment:
| Q |
1 |
aaatgtaagaccaagtttgcaagatcccaatcctatagtttgcaactgaaaaggcgggacccagttttcggtaaatctcaatactag |
87 |
Q |
| |
|
||||||||||||||||||||| |||| |||| | ||||| | || ||||||||||||||||| | |||||||||||||||| |||| |
|
|
| T |
13928936 |
aaatgtaagaccaagtttgcaggatctcaattccatagtgtccagttgaaaaggcgggacccaatcttcggtaaatctcaatgctag |
13929022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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