View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11311_low_2 (Length: 568)
Name: NF11311_low_2
Description: NF11311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11311_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 544; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 52471568 - 52472119
Alignment:
| Q |
1 |
gagcattaaagttgaagaacatgaaattggaacagacaacaagcaaatatgatgaggctaatgtgttcctaatgaaactgatggatcaagaagaggagat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52471568 |
gagcattaaagttgaagaacatgaaattggaacagacaacaagcaaatatgatgaggctaatgtgttcctaatgaaactgatggatcaagaagaggagat |
52471667 |
T |
|
| Q |
101 |
gcttgaaaattttaataagggtatgttgatactttaatgaacagttttactaaataatggtattatgtttcactgaatttaaaggtgaaacaatctgatt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52471668 |
gcttgaaaattttaataagggtatgttgatactttaatgaacagttttactaaataatggtattatgtttcactgaatttaaaagtgaaacaatctgatt |
52471767 |
T |
|
| Q |
201 |
ttattatattatatccatcctttcggcatagtgtacattctgttgcattttaaaatgatgtgttgcagatgatgtaatttttggtagcttagtttgtttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52471768 |
ttattatattatatccatcctttcggcatagtgtacattctgttgcattttaaaatgatgtgttgcagatgatgtaatttttggtagcttagtttgtttc |
52471867 |
T |
|
| Q |
301 |
acattgttccattagaaatcagcaaaatgcggcaagttgaacgcaactatctggaaaatatgtctaaggatcatgaaaaagccatgttggaactggaagc |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52471868 |
acattgttccattagaaatcagcaagatgcggcaagttgaacgcaactatctggaaaatatgtctaaggatcatgaaaaagccatgttggaactggaagc |
52471967 |
T |
|
| Q |
401 |
taggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaataagctatatcttgagaggaaacaggta |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52471968 |
taggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaataagctatatcttgagaggaaacaggta |
52472067 |
T |
|
| Q |
501 |
atttattttggctcttcgattttatggtagcaatactattcactcttgttaa |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52472068 |
atttattttggctcttcgattttatggtagcaatactattcactcttgttaa |
52472119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 295 - 502
Target Start/End: Complemental strand, 16409057 - 16408850
Alignment:
| Q |
295 |
tgtttcacattgttccattagaaatcagcaaaatgcggcaagttgaacgcaactatctggaaaatatgtctaaggatcatgaaaaagccatgttggaact |
394 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||| ||||||||| | |||| ||| || || || ||||||||||||||||||| | ||||||| |
|
|
| T |
16409057 |
tgtttcatattgttccattagaaatcagcaagatgcggcaggttgaacgcgagtatcaggagaaaatatccaaggatcatgaaaaagccaggctggaact |
16408958 |
T |
|
| Q |
395 |
ggaagctaggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaataagctatatcttgagaggaaa |
494 |
Q |
| |
|
|||||| ||| ||||| |||||||||||||||| |||||||||||||||||||| ||||||| |||||||||| ||||||||||||||||||| |||| |
|
|
| T |
16408957 |
agaagcttggaaaaatgagcttatgtcccgtgaaaaggatctgcagaagcgtcaagcagataatcacaatgagagaaataagctatatcttgagaagaaa |
16408858 |
T |
|
| Q |
495 |
caggtaat |
502 |
Q |
| |
|
|| ||||| |
|
|
| T |
16408857 |
catgtaat |
16408850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 282 - 534
Target Start/End: Complemental strand, 16413494 - 16413242
Alignment:
| Q |
282 |
tggtagcttagtttgtttcacattgttccattagaaatcagcaaaatgcggcaagttgaacgcaactatctggaaaatatgtctaaggatcatgaaaaag |
381 |
Q |
| |
|
|||||||| ||| |||||||||||||||| |||||||||||||| |||||||| ||||||||| | ||||| || | || | |||||||| ||||||| |
|
|
| T |
16413494 |
tggtagctaagtctgtttcacattgttccgttagaaatcagcaagatgcggcaggttgaacgcgattatcttgagagcataacgaaggatcaagaaaaag |
16413395 |
T |
|
| Q |
382 |
ccatgttggaactggaagctaggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaataagctata |
481 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||| || |||| ||||||||||||||| |||| ||||||| ||| || ||| ||||||||||| |
|
|
| T |
16413394 |
ccatactggaactggaagcgctgaggaatgaacttatgttacgagaaaaggatctgcagaagcgacaagaagataatcacattgtgagaaataagctata |
16413295 |
T |
|
| Q |
482 |
tcttgagaggaaacaggtaatttattttggctcttcgattttatggtagcaat |
534 |
Q |
| |
|
| || | | ||||| |||||||||||| |||||| || |||||||||||||| |
|
|
| T |
16413294 |
ttttcaaacaaaacatgtaatttattttagctctttgaatttatggtagcaat |
16413242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 28 - 134
Target Start/End: Complemental strand, 16409308 - 16409202
Alignment:
| Q |
28 |
tggaacagacaacaagcaaatatgatgaggctaatgtgttcctaatgaaactgatggatcaagaagaggagatgcttgaaaattttaataagggtatgtt |
127 |
Q |
| |
|
||||||||||| ||||||| |||||||||| ||||||| ||||| |||| |||||||||| |||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
16409308 |
tggaacagacagcaagcaagtatgatgaggtgaatgtgtccctaaggaaagcgatggatcaaaaagaaaagatgcttgaacattttaataagggtatgtt |
16409209 |
T |
|
| Q |
128 |
gatactt |
134 |
Q |
| |
|
|| |||| |
|
|
| T |
16409208 |
gaaactt |
16409202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 125; Significance: 4e-64; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 282 - 534
Target Start/End: Original strand, 40750968 - 40751220
Alignment:
| Q |
282 |
tggtagcttagtttgtttcacattgttccattagaaatcagcaaaatgcggcaagttgaacgcaactatctggaaaatatgtctaaggatcatgaaaaag |
381 |
Q |
| |
|
|||||||| ||| ||||||| |||||| |||||||||||||||| |||||||| |||||| || | |||| ||| || | |||||||||||||||||| |
|
|
| T |
40750968 |
tggtagctgagtctgtttcatattgtttcattagaaatcagcaagatgcggcaggttgaatgcgagtatcaggagaaagtatctaaggatcatgaaaaat |
40751067 |
T |
|
| Q |
382 |
ccatgttggaactggaagctaggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaataagctata |
481 |
Q |
| |
|
||| | |||||||||||||| ||||||||||||||||||||||||| | |||||| ||||||||||||| ||||||| |||||||||| | |||||||| |
|
|
| T |
40751068 |
ccaggctggaactggaagctcggaggaatgaacttatgtcccgtgagaaggatctacagaagcgtcaagcagataatcacaatgagagaaccaagctata |
40751167 |
T |
|
| Q |
482 |
tcttgagaggaaacaggtaatttattttggctcttcgattttatggtagcaat |
534 |
Q |
| |
|
| |||||| |||||| ||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
40751168 |
ttttgagaagaaacatgtaatgtattttggctctttgaatttatggtagcaat |
40751220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 282 - 534
Target Start/End: Original strand, 41476719 - 41476971
Alignment:
| Q |
282 |
tggtagcttagtttgtttcacattgttccattagaaatcagcaaaatgcggcaagttgaacgcaactatctggaaaatatgtctaaggatcatgaaaaag |
381 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||||||||||| |||||||| |||||||| | |||| ||| || | || ||||||||||||| || |
|
|
| T |
41476719 |
tggtagctgagtctgtttcacattgttccattagaaatcagcaagatgcggcaggttgaacgtgagtatcaggagaaagtatcgaaggatcatgaaatag |
41476818 |
T |
|
| Q |
382 |
ccatgttggaactggaagctaggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaataagctata |
481 |
Q |
| |
|
| | | |||||||||| || ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||| ||||||||| || |||||||| |
|
|
| T |
41476819 |
ctaggcaggaactggaaactcggaggaatgaacttaagtcccgtgaaaaggatctgcagaagcgtcaagcagataatctcaatgagagaaacaagctata |
41476918 |
T |
|
| Q |
482 |
tcttgagaggaaacaggtaatttattttggctcttcgattttatggtagcaat |
534 |
Q |
| |
|
|||||||| |||| | ||||| ||||||||||||| || |||||||||||||| |
|
|
| T |
41476919 |
tcttgagaagaaaaatgtaatgtattttggctctttgagtttatggtagcaat |
41476971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 282 - 534
Target Start/End: Original strand, 41483762 - 41484014
Alignment:
| Q |
282 |
tggtagcttagtttgtttcacattgttccattagaaatcagcaaaatgcggcaagttgaacgcaactatctggaaaatatgtctaaggatcatgaaaaag |
381 |
Q |
| |
|
|||||||||||| ||||| | ||||| ||||||| |||||||| |||||||| |||||||| | || | ||| || | ||||||||||||||||||| |
|
|
| T |
41483762 |
tggtagcttagtctgttttattttgtttcattagagatcagcaagatgcggcaggttgaacgagagtaccaggagaaagtatctaaggatcatgaaaaag |
41483861 |
T |
|
| Q |
382 |
ccatgttggaactggaagctaggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaataagctata |
481 |
Q |
| |
|
||| | |||||||||||||| ||||||| || ||||| |||||||| | |||||||||||||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
41483862 |
ccaggctggaactggaagctcggaggaacgagcttatttcccgtgagaaggatctgcagaagcgtgaagtagataatcacaatgagaaagccaagctata |
41483961 |
T |
|
| Q |
482 |
tcttgagaggaaacaggtaatttattttggctcttcgattttatggtagcaat |
534 |
Q |
| |
|
| |||||| | |||| ||||| ||||| ||||||| | |||||| ||||||| |
|
|
| T |
41483962 |
ttttgagaagcaacatgtaatgtatttcggctcttttaatttatgatagcaat |
41484014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 295 - 534
Target Start/End: Original strand, 41469720 - 41469959
Alignment:
| Q |
295 |
tgtttcacattgttccattagaaatcagcaaaatgcggcaagttgaacgcaactatctggaaaatatgtctaaggatcatgaaaaagccatgttggaact |
394 |
Q |
| |
|
|||||||||||||||| |||||||||||||| | | ||| ||||||||| | |||||||| | ||||| |||||| ||||||||||||| | |||| |
|
|
| T |
41469720 |
tgtttcacattgttcccttagaaatcagcaaggtacagcaggttgaacgcgattatctggagagcatgtcgaaggattatgaaaaagccattcttcaact |
41469819 |
T |
|
| Q |
395 |
ggaagctaggaggaatgaacttatgtcccgtgaaatggatctgcagaagcgtcaagtagataatgacaatgagagcaataagctatatcttgagaggaaa |
494 |
Q |
| |
|
|||||| |||||||||| |||||||| ||||||| ||||||||||||| |||||| ||||||| ||| ||||| ||||||| |||| || ||| | |
|
|
| T |
41469820 |
agaagctcggaggaatgagcttatgtcacgtgaaaaggatctgcagaagggtcaagaagataattacatcgagagaaataagcaatattttcagacgggc |
41469919 |
T |
|
| Q |
495 |
caggtaatttattttggctcttcgattttatggtagcaat |
534 |
Q |
| |
|
|| ||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
41469920 |
catgtaatttcttttagctcttcggatttatggtagcaat |
41469959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 41476444 - 41476550
Alignment:
| Q |
25 |
aattggaacagacaacaagcaaatatgatgaggctaatgtgttcctaatgaaactgatggatcaagaagaggagatgcttgaaaattttaataagggtat |
124 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||||| |||| ||| |||| ||||||||||| ||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
41476444 |
aattggaacatacagcaagcaaatatgatgaggctaatgcgttcttaaggaaagtgatggatcaaaaagagaagatgcttgaagcttttaatgagggtat |
41476543 |
T |
|
| Q |
125 |
gttgata |
131 |
Q |
| |
|
||||||| |
|
|
| T |
41476544 |
gttgata |
41476550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 40750704 - 40750810
Alignment:
| Q |
25 |
aattggaacagacaacaagcaaatatgatgaggctaatgtgttcctaatgaaactgatggatcaagaagaggagatgcttgaaaattttaataagggtat |
124 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||| ||||||| ||||| |||| ||||| ||| ||||| |||||||||| |||| ||||||||||| |
|
|
| T |
40750704 |
aattggaacagacagcaagcaaatacgatgaggcgaatgtgtccctaaggaaagcaatggaacaaaaagagatgatgcttgaacatttcaataagggtat |
40750803 |
T |
|
| Q |
125 |
gttgata |
131 |
Q |
| |
|
||||||| |
|
|
| T |
40750804 |
gttgata |
40750810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 131
Target Start/End: Original strand, 41483498 - 41483604
Alignment:
| Q |
25 |
aattggaacagacaacaagcaaatatgatgaggctaatgtgttcctaatgaaactgatggatcaagaagaggagatgcttgaaaattttaataagggtat |
124 |
Q |
| |
|
||||||| |||||| ||||||| |||||||||| ||||||| ||||| |||| |||||||||| | || ||||||||||| |||| ||||||||||| |
|
|
| T |
41483498 |
aattggagcagacagcaagcaagtatgatgaggtgaatgtgtccctaaggaaagcgatggatcaaaaggaaaagatgcttgaacatttcaataagggtat |
41483597 |
T |
|
| Q |
125 |
gttgata |
131 |
Q |
| |
|
||||||| |
|
|
| T |
41483598 |
gttgata |
41483604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 41469392 - 41469523
Alignment:
| Q |
6 |
ttaaagttgaagaacatgaaattggaacag---acaacaagcaaatatgatgaggctaatgtgttcctaatgaaactgatggatcaagaagaggagatgc |
102 |
Q |
| |
|
|||||| |||||| |||| |||||||||| |||| |||||||||| |||||||||||||| |||| |||| ||||||||||| |||||||||||| |
|
|
| T |
41469392 |
ttaaagctgaagaccatggaattggaacatcatacaataagcaaatatagcgaggctaatgtgtttctaaagaaagtgatggatcaaaaagaggagatgc |
41469491 |
T |
|
| Q |
103 |
ttgaaaattttaataagggtatgttgatactt |
134 |
Q |
| |
|
|| || | |||| ||||||||||| |||||| |
|
|
| T |
41469492 |
ttcaacagtttatcaagggtatgttaatactt |
41469523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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