View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11311_low_3 (Length: 558)
Name: NF11311_low_3
Description: NF11311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11311_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 28 - 256
Target Start/End: Complemental strand, 52948199 - 52947969
Alignment:
| Q |
28 |
gatacttaaggtgatcatcataacctaactcttttagtataccagtagcttcaaagtaacaccacctatccctatcaatcccatta--actacgtgttct |
125 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
52948199 |
gatacttaaggtgatcatcataacctaactcttttagtataccagtcgcttcgaagtaacaccacctatccctatcaatcccattactactacgtgttct |
52948100 |
T |
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| Q |
126 |
tgacccccagtgtaatacaaaatgtagtccctaacaaattcacccccttggtgaaatacaactgacacactcatccctgtcaaattttagaaacataaac |
225 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
52948099 |
tgacccccagtgtaatacaaaatatagtccgtaacaaattcacccccatggtgaaatacaattgacacactcatccctgtcaaattttagaaacataaac |
52948000 |
T |
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| Q |
226 |
tttgttaataaaccttcatcttcgtctctac |
256 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
52947999 |
tttgttaataaaccttcatcttcgtctctac |
52947969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 318 - 532
Target Start/End: Complemental strand, 52947907 - 52947692
Alignment:
| Q |
318 |
gacatccattctactcttttacatcattacaaactaacattcaaagattttttgattcaaacaacaaacaaaatataacaagnnnnnnnnnc--agagga |
415 |
Q |
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| T |
52947907 |
gacatccattctactcttttacatcattataaactagcattcaaagattttttgattcaaacaacaaacaaaagataagaagaagaaaaaaataagagga |
52947808 |
T |
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| Q |
416 |
tatgnnnnnnntgttctacctcaatcgcaagccaaaaaccgcttcttctaccgtcgatcaccttcacaaaccttcgttgaccatcgattacactttgttg |
515 |
Q |
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| T |
52947807 |
ta-ggttagaatgttctacctcaatcgcaagccaaaaaccgcttcttctaccgtcgatcaccttcaaaaaccttcgctaactgttgattacacttcgttg |
52947709 |
T |
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| Q |
516 |
ccgtgattcaccgtcaa |
532 |
Q |
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| T |
52947708 |
ccgtgattcaccgtcaa |
52947692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 31810799 - 31810722
Alignment:
| Q |
29 |
atacttaaggtgatcatcataacctaactcttttagtataccagtagcttcaaagtaacaccacctatccctatcaat |
106 |
Q |
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|||||||||||||||| ||| ||||| ||||| | ||| ||||||||||||||||| |||||| | ||| ||||||| |
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| T |
31810799 |
atacttaaggtgatcagaatatcctaaatctttcaatatcccagtagcttcaaagtagcaccacttgtccttatcaat |
31810722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 30 - 114
Target Start/End: Complemental strand, 19393551 - 19393467
Alignment:
| Q |
30 |
tacttaaggtgatcatcataacctaactcttttagtataccagtagcttcaaagtaacaccacctatccctatcaatcccattaa |
114 |
Q |
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| T |
19393551 |
tacttaaggtgatcatcatatcctaaatctttcaatatcctagtagcttcaaagtagcaccacttgtccttatcaatctcattaa |
19393467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 114
Target Start/End: Complemental strand, 7797557 - 7797472
Alignment:
| Q |
29 |
atacttaaggtgatcatcataacctaactcttttagtataccagtagcttcaaagtaacaccacctatccctatcaatcccattaa |
114 |
Q |
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| T |
7797557 |
atacttaaggtgatcaaaatatcctaaatctttcaatatcccagtagcttcaaagtagcaccacttgtccttatcaatctcattaa |
7797472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 30320414 - 30320491
Alignment:
| Q |
29 |
atacttaaggtgatcatcataacctaactcttttagtataccagtagcttcaaagtaacaccacctatccctatcaat |
106 |
Q |
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| T |
30320414 |
atacttaaggtgatcagaatatcctaaatctttcaatatcccagtagcttcaaagtagcaccacttgtccttatcaat |
30320491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 106
Target Start/End: Complemental strand, 22055144 - 22055067
Alignment:
| Q |
29 |
atacttaaggtgatcatcataacctaactcttttagtataccagtagcttcaaagtaacaccacctatccctatcaat |
106 |
Q |
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|||||||||||||||| ||| ||||| ||||| | ||| ||||||||||||||||| || ||| | ||| ||||||| |
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| T |
22055144 |
atacttaaggtgatcagaatatcctaaatctttcaatatcccagtagcttcaaagtagcaacacttgtccttatcaat |
22055067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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