View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11311_low_5 (Length: 481)
Name: NF11311_low_5
Description: NF11311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11311_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 451; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 17 - 467
Target Start/End: Original strand, 37832516 - 37832966
Alignment:
| Q |
17 |
cactgacaccgtatgctaagaaaagaacccaaaatttgctacgtacaaaattctgcaggtccacatcatttagatgaaaactacaagacctacacagagc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37832516 |
cactgacaccgtatgctaagaaaagaacccaaaatttgctacgtacaaaattctgcaggtccacatcatttagatgaaaactacaagacctacacagagc |
37832615 |
T |
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| Q |
117 |
ctgtcaagctaccaaaaagctagatcagcgctaatacacacatcctaccataagactcacaaattttccacctgaacccaaacaatacaggcacaattcc |
216 |
Q |
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| T |
37832616 |
ctgtcaagctaccaaaaagctagatcagcgctaatacacacatcctaccataagactcacaaattttccacctgaacccaaacaatacaggcacaattcc |
37832715 |
T |
|
| Q |
217 |
aaaggactccaatctaaaataaaatgcacaccaaaactcaatgaaacttaattggagttttcctttgaataaagccactctcaaaaactcaaattctgct |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37832716 |
aaaggactccaatctaaaataaaatgcacaccaaaactcaatgaaacttaattggagttttcctttgaataaagccactctcaaaaactcaaattctgct |
37832815 |
T |
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| Q |
317 |
aacaacaatcttaaagcatacttataaaaataaacaagcaaaaatcttatgctaggactagggtgaattattaagcataagaactagctcaatgtcttaa |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37832816 |
aacaacaatcttaaagcatacttataaaaataaacaagcaaaaatcttatgctaggactagggtgaattattaagcataagaactagctcaatgtcttaa |
37832915 |
T |
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| Q |
417 |
acgaaactaacaacaaaataaatctctagagtaaatttcagtagtttgtcc |
467 |
Q |
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| T |
37832916 |
acgaaactaacaacaaaataaatctctagagtaaatttcagtagtttgtcc |
37832966 |
T |
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