View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11311_low_7 (Length: 362)
Name: NF11311_low_7
Description: NF11311
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11311_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 337; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 3 - 347
Target Start/End: Complemental strand, 8958068 - 8957724
Alignment:
| Q |
3 |
aggagcagagatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaact |
102 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8958068 |
aggagcagtgatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaact |
8957969 |
T |
|
| Q |
103 |
gttttcttgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatga |
202 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8957968 |
gttttcatgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatga |
8957869 |
T |
|
| Q |
203 |
tggatgcaaaactattttctgaaaagtatatgtttgtaacatttgtaataaaaacagccccaagaacttttgcttcatccaaattatcgacttgataaaa |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8957868 |
tggatgcaaaactattttctgaaaagtatatgtttgtaacatttgtaataaaaacagccccaagaacttttgcttcatccaaattatcgacttgataaaa |
8957769 |
T |
|
| Q |
303 |
aaggctagctccgtccttgtcttcacacacaacaatcttgttttt |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8957768 |
aaggctagctccgtccttgtcttcacacacaacaatcttgttttt |
8957724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 13 - 133
Target Start/End: Original strand, 8946009 - 8946129
Alignment:
| Q |
13 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
112 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||| || ||||| |||||| |||| |||||| ||||||||||||| ||||||||| || | ||||| |
|
|
| T |
8946009 |
atgtcaggtttcaagacatatggacaactatttgatggtcctctcgaactagaagagtaaacaccaggtgctggtttagttccaaaaattgataacttga |
8946108 |
T |
|
| Q |
113 |
aagacatgcttgcttttgaag |
133 |
Q |
| |
|
||||||| ||||| |||||| |
|
|
| T |
8946109 |
aagacatatttgctattgaag |
8946129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 140
Target Start/End: Complemental strand, 8963072 - 8962945
Alignment:
| Q |
13 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
112 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||||| |||||||| ||||||||| || || |||||| |||||||| |||||| ||| |||||| |
|
|
| T |
8963072 |
atgtcaggtttcaacacatatggacaactctttgatggccctctagaactataaaaatccaccctaggtactggtttagcaccaaaagatgtaatcttga |
8962973 |
T |
|
| Q |
113 |
aagacatgcttgcttttgaagtagagtt |
140 |
Q |
| |
|
||||||| || || ||||| ||||||| |
|
|
| T |
8962972 |
aagacattttttctattgaactagagtt |
8962945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 13 - 347
Target Start/End: Original strand, 34962792 - 34963117
Alignment:
| Q |
13 |
atgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgttttcttga |
112 |
Q |
| |
|
|||||||||||||| | | |||||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||| ||| |
|
|
| T |
34962792 |
atgtcaggtttcaacacaaatggacaactatatgatggccctcttgaactatatgaatcaacactaggtgctggtttagttccaaaaactgttttcatga |
34962891 |
T |
|
| Q |
113 |
aagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatgatggatgcaaa |
212 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||||||||||||||||||||| | ||| ||||| ||||||| ||||| ||||| |||||| |
|
|
| T |
34962892 |
aagacatgcttgcaattgaag---------tagagttactactcttgatgtaagctttgacaatttcaccatttattggattaacaaggatggttgcaaa |
34962982 |
T |
|
| Q |
213 |
actattttctgaaaagtatatgtttgtaacatttgtaataaaaacagccccaagaacttttgcttcatccaaattatcgacttgataaaaaaggctagct |
312 |
Q |
| |
|
|||||||| |||| || |||||| || ||||||| ||| |||||||| |||| |||||||||| ||| |||||||| |||||| | ||| ||| || | |
|
|
| T |
34962983 |
actattttgtgaatagaatatgtctgagacatttgaaatcaaaacagctccaaaaacttttgctgcattcaaattattgacttggtcaaataggtcagtt |
34963082 |
T |
|
| Q |
313 |
ccgtccttgtcttcacacacaacaatcttgttttt |
347 |
Q |
| |
|
|| | ||||||||||||||| | ||||||| |||| |
|
|
| T |
34963083 |
ccattcttgtcttcacacactataatcttgctttt |
34963117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 21687162 - 21687374
Alignment:
| Q |
3 |
aggagcagagatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaact |
102 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||||||||||| || || ||||| |||||| || |||||||||| || ||||| || ||| || |
|
|
| T |
21687162 |
aggagcagtgatgtcaggtttcaacacatatggacaactatttgatggtccccttgagctataaaaatccacactaggtgttgatttaacaccgaaagct |
21687261 |
T |
|
| Q |
103 |
gttttcttgaaagacatgcttgcttttgaagtagagtttttagagttataactcttgatgtaagctttgactacttctccattgattggatcaacaatga |
202 |
Q |
| |
|
|||||||||||||||||| ||||| ||||| ||| | |||||||||| |||||||||||||||||| || | ||||||||| | ||||| || ||||| |
|
|
| T |
21687262 |
gttttcttgaaagacatgtttgctattgaactagcg---ttagagttatgactcttgatgtaagctttcacaatttctccatttactggattaataatga |
21687358 |
T |
|
| Q |
203 |
tggatgcaaaactatt |
218 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
21687359 |
tggatgggaaactatt |
21687374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 5 - 125
Target Start/End: Original strand, 19375878 - 19375998
Alignment:
| Q |
5 |
gagcagagatgtcaggtttcaaaatatatggacaactatttgaaggccctcttgaactataagaagaaacactaggtgctggtttaattccaaaaactgt |
104 |
Q |
| |
|
|||||| |||||| |||||||| | | |||||||| |||||||||||||||||||||||||| | ||||||||||| |||||||| ||||||| ||| |
|
|
| T |
19375878 |
gagcagtgatgtcgggtttcaacacaaatggacaattatttgaaggccctcttgaactataaagatcaacactaggtgttggtttaacaccaaaaattgt |
19375977 |
T |
|
| Q |
105 |
tttcttgaaagacatgcttgc |
125 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
19375978 |
tttcttgaaagacatgcttgc |
19375998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University