View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11312_high_5 (Length: 328)

Name: NF11312_high_5
Description: NF11312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11312_high_5
NF11312_high_5
[»] chr1 (2 HSPs)
chr1 (14-312)||(12190990-12191288)
chr1 (17-98)||(12185658-12185737)
[»] chr3 (6 HSPs)
chr3 (149-253)||(5499120-5499223)
chr3 (153-246)||(1655103-1655196)
chr3 (156-246)||(2550692-2550782)
chr3 (156-246)||(13846518-13846608)
chr3 (153-246)||(7407233-7407326)
chr3 (153-229)||(7395662-7395738)
[»] chr7 (3 HSPs)
chr7 (153-254)||(19747744-19747845)
chr7 (153-246)||(4684882-4684975)
chr7 (99-148)||(19747901-19747950)
[»] chr5 (4 HSPs)
chr5 (153-246)||(7411840-7411933)
chr5 (153-246)||(5077293-5077386)
chr5 (99-148)||(5077188-5077237)
chr5 (108-148)||(7411989-7412029)
[»] chr8 (4 HSPs)
chr8 (153-246)||(28248559-28248652)
chr8 (156-246)||(45355596-45355686)
chr8 (153-246)||(25639335-25639428)
chr8 (99-149)||(28248453-28248503)
[»] chr4 (2 HSPs)
chr4 (156-246)||(43600793-43600883)
chr4 (148-201)||(1472998-1473051)
[»] chr6 (2 HSPs)
chr6 (153-246)||(15362243-15362336)
chr6 (153-246)||(16735332-16735425)
[»] chr2 (1 HSPs)
chr2 (153-246)||(31342211-31342304)
[»] scaffold0576 (1 HSPs)
scaffold0576 (153-246)||(7227-7320)


Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 12191288 - 12190990
Alignment:
Q  14 agagactgcatcaagagccaagaaagaaacgcataatattcaactttctgccatcgacggttacaaagagtgaagtctctaccaattggtcagtttcagt 113  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12191288 agagactgcatcaagagccaagaaagaaacgcataatattcgactttctgccatcgacgattacaaagagtgaagtctctaccaattggtcagtttcagt 12191189  T
Q  114 tttgccacatccaattgataatgattctcgtgacaagatatgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaac 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12191188 tttgccacatccaattgataatgattctcgtgacaagatatgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaac 12191089  T
Q  214 acaacggagattaaagaaaaggcttgcacttctattgtgcaacctgatagtcaatcaagttaatttatatattttatgaaatcgttgaaccatttaaag 312  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12191088 acaacggagattaaagaaaaggcttgcacttctattgtgcagcctgatagtcaatcaagttaatttatatattttatgaaatcgttgaaccgtttaaag 12190990  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 12185737 - 12185658
Alignment:
Q  17 gactgcatcaagagccaagaaagaaacgcataatattcaactttctgccatcgacggttacaaagagtgaagtctctaccaa 98  Q
    ||||||||||||||||||||||||||| ||   ||||| ||||| || |||||||| |||||||||||||||||||||||||    
T  12185737 gactgcatcaagagccaagaaagaaacacag--tattcgactttttgtcatcgacgattacaaagagtgaagtctctaccaa 12185658  T

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Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 149 - 253
Target Start/End: Complemental strand, 5499223 - 5499120
Alignment:
Q  149 agatatgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttctat 248  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||| ||| |||| ||||||||||||||||| ||||| ||||||    
T  5499223 agatatgtctgcaatcttgcaggcagagcattatgaagatgcttgcg-gtaagcaacgccgcaatacaaaggagattaaagaaaaggattgcatttctat 5499125  T
Q  249 tgtgc 253  Q
    |||||    
T  5499124 tgtgc 5499120  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 1655196 - 1655103
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  1655196 atgtctgcaatcttgcaggcagaacattatgaagatgattgcggataagcaacgacacaagacaaaggagattaaagagaaggcttgcatttct 1655103  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 2550782 - 2550692
Alignment:
Q  156 tctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  2550782 tctgcaatcttgcaggcagaacattatgaagatgattgcggataagcaacggcacaagacaaaggagattaaagagaaggcttgcatttct 2550692  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 13846608 - 13846518
Alignment:
Q  156 tctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  13846608 tctgcaatcttgcaggcagaacattatgaagatgattgcggataagcaacggcacaagacaaaggagattaaagagaaggcttgcatttct 13846518  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 7407233 - 7407326
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    |||||||||||||||| |||||| ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  7407233 atgtctgcaatcttgctggcagaacattatgaagatgattgcggataagcaacggcacaagacaaaggagattaaagagaaggcttgcatttct 7407326  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 153 - 229
Target Start/End: Original strand, 7395662 - 7395738
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaag 229  Q
    |||||||||||||||| |||||| ||||||||||||| ||||| ||||| || | || || |||| |||||||||||    
T  7395662 atgtctgcaatcttgctggcagaacattatgaagatgattgcggataagcaatggcataagacaaaggagattaaag 7395738  T

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Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 19747845 - 19747744
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttctattgtg 252  Q
    ||||||||||||||||||||| | ||||||||||||||||||| ||||| |||||||||| |||| |||||||||||| |||| ||||| ||||| ||||    
T  19747845 atgtctgcaatcttgcaggcaaaacattatgaagatgcttgcggataagcaacgccacaagacaaaggagattaaagagaaggattgcatttctaatgtg 19747746  T
Q  253 ca 254  Q
    ||    
T  19747745 ca 19747744  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 4684882 - 4684975
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    |||||||||||||||| |||||| ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  4684882 atgtctgcaatcttgctggcagaacattatgaagatgattgcggataagcaacgacacaagacaaaggagattaaagagaaggcttgcatttct 4684975  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 19747950 - 19747901
Alignment:
Q  99 ttggtcagtttcagttttgccacatccaattgataatgattctcgtgaca 148  Q
    ||||| ||||||||||| ||||||| |||||||||||||||||| |||||    
T  19747950 ttggtaagtttcagtttggccacattcaattgataatgattctcatgaca 19747901  T

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Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 7411933 - 7411840
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||| |||| |||||||||||| |||||||||| ||||    
T  7411933 atgtctgcaatcttgcaggcagaacattatgaagatgattgcggataagcaacgccacaagacaaaggagattaaagagaaggcttgcatttct 7411840  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 5077293 - 5077386
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||| |||| |||| ||||||| |||||||||| ||||    
T  5077293 atgtctgcaatcttgcaggcagaacattatgaagatgattgcggataagcaacgccacaagacaaaggaggttaaagagaaggcttgcatttct 5077386  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 148
Target Start/End: Original strand, 5077188 - 5077237
Alignment:
Q  99 ttggtcagtttcagttttgccacatccaattgataatgattctcgtgaca 148  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| |||||    
T  5077188 ttggtaagtttcagttttgccacattcaattgataatgattctcatgaca 5077237  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 7412029 - 7411989
Alignment:
Q  108 ttcagttttgccacatccaattgataatgattctcgtgaca 148  Q
    |||||||||||||||| || ||||||||||||||| |||||    
T  7412029 ttcagttttgccacattcagttgataatgattctcatgaca 7411989  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 28248559 - 28248652
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  28248559 atgtctgcaatcttgcaggcagaacattatgaagatgattgcggataagcaacgacacaagacaaaggagattaaagagaaggcttgcatttct 28248652  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 45355596 - 45355686
Alignment:
Q  156 tctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  45355596 tctgcaatcttgcaggcagaacattatgaagatgattgcggataagcaacggcacaagacaaaggagattaaagagaaggcttgcatttct 45355686  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 25639428 - 25639335
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    |||||||||||||||| |||||| ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  25639428 atgtctgcaatcttgctggcagaacattatgaagatgattgcggataagcaacggcacaagacaaaggagattaaagagaaggcttgcatttct 25639335  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 149
Target Start/End: Original strand, 28248453 - 28248503
Alignment:
Q  99 ttggtcagtttcagttttgccacatccaattgataatgattctcgtgacaa 149  Q
    ||||| ||||||||||||||||||| ||||||||||||||| || ||||||    
T  28248453 ttggtaagtttcagttttgccacattcaattgataatgattttcatgacaa 28248503  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 156 - 246
Target Start/End: Complemental strand, 43600883 - 43600793
Alignment:
Q  156 tctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    |||||||||||||||||||| ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  43600883 tctgcaatcttgcaggcagaacattatgaagatgattgcggataagcaacggcacaagacaaaggagattaaagagaaggcttgcatttct 43600793  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 1472998 - 1473051
Alignment:
Q  148 aagatatgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataag 201  Q
    |||||||| ||| |||| |||||||||||| || |||||||||||||| |||||    
T  1472998 aagatatggctggaatcctgcaggcagagctttgtgaagatgcttgcggataag 1473051  T

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Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 15362336 - 15362243
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    |||||||||||||||| |||||| ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  15362336 atgtctgcaatcttgctggcagaacattatgaagatgattgcggataagcaacggcacaagacaaaggagattaaagagaaggcttgcatttct 15362243  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 16735425 - 16735332
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    |||||||||||||||| |||||| ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  16735425 atgtctgcaatcttgctggcagaacattatgaagatgattgcggataagcaacggcacaagacaaaggagattaaagagaaggcttgcatttct 16735332  T

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Target: chr2 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 153 - 246
Target Start/End: Original strand, 31342211 - 31342304
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    |||||||||||||||| |||||| ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  31342211 atgtctgcaatcttgctggcagaacattatgaagatgattgcggataagcaacggcacaagacaaaggagattaaagagaaggcttgcatttct 31342304  T

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Target: scaffold0576 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 153 - 246
Target Start/End: Complemental strand, 7320 - 7227
Alignment:
Q  153 atgtctgcaatcttgcaggcagagcattatgaagatgcttgcgtataagtaacgccacaacacaacggagattaaagaaaaggcttgcacttct 246  Q
    |||||||||||||||| | | || ||||||||||||| ||||| ||||| |||| ||||| |||| |||||||||||| |||||||||| ||||    
T  7320 atgtctgcaatcttgctgtcggaacattatgaagatgattgcggataagcaacggcacaagacaaaggagattaaagagaaggcttgcatttct 7227  T

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