View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11312_high_8 (Length: 232)
Name: NF11312_high_8
Description: NF11312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11312_high_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 34455999 - 34455765
Alignment:
| Q |
1 |
acacttagtttcgaacattcttaaattcaatgaaattctaaattaaggtttgtaaaattggtttagtatcaagatttcaa-gtaagttcagacaagttag |
99 |
Q |
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| T |
34455999 |
acacttagtttcgtacattcttaaattcacagaaattctaaattaaggtttgtaaaattggtttagtatcaagatttcaaagtaagttcagacaagttag |
34455900 |
T |
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| Q |
100 |
agaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgattgaatacttcctatgcttcaaatataacttcgtatatcc |
199 |
Q |
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| T |
34455899 |
agaaagttgtgttggcatcaaacttaaataacttctcatccaatggttcctcttaatcgattgtataattcgtatgcttcaaatataacttcgtatatcc |
34455800 |
T |
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| Q |
200 |
tttgcg--tatgtctccatctttggttaacgacat |
232 |
Q |
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||| || ||||||||||||||||||||||||||| |
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| T |
34455799 |
tttacgtatatgtctccatctttggttaacgacat |
34455765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 4 - 109
Target Start/End: Complemental strand, 32268635 - 32268530
Alignment:
| Q |
4 |
cttagtttcgaacattcttaaattcaatgaaattctaaattaaggtttgtaaaattggtttagtatcaagatttcaagtaagttcagacaagttagagaa |
103 |
Q |
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| T |
32268635 |
cttagtttcgatcgttcttaaattcacaggaattctaaattaaggtttgtaaaattggtttggtggcaggattgcaattaagttaagacaagttatataa |
32268536 |
T |
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| Q |
104 |
agttgt |
109 |
Q |
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|||||| |
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| T |
32268535 |
agttgt |
32268530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 4 - 162
Target Start/End: Original strand, 29020188 - 29020346
Alignment:
| Q |
4 |
cttagtttcgaacattcttaaattcaatgaaattctaaattaaggtttgtaaaattggtttagtatcaagatttcaagtaagttcagacaagttagagaa |
103 |
Q |
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| T |
29020188 |
cttagtttcaatcattcttaaattcactgaaattctaaattaaggtttgtaaaattgttttggtagcaggattgcaagcaagttaagacaagttagagaa |
29020287 |
T |
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| Q |
104 |
agttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgattg |
162 |
Q |
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| T |
29020288 |
agttgtgttgggattagacttagataatttcacatccaatggttcctcttaatcgattg |
29020346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 1467877 - 1467830
Alignment:
| Q |
142 |
atggttcctcttaatcgattgaatacttcctatgcttcaaatataact |
189 |
Q |
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| T |
1467877 |
atggttcctcttaatcgattgtatactttttatgcctcaaatataact |
1467830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 13002197 - 13002265
Alignment:
| Q |
93 |
aagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgatt |
161 |
Q |
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| T |
13002197 |
aagtttgagaaagttgtgttggaattagacttagataacttctcatccaatggttcctcttaatcgatt |
13002265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 13076855 - 13076923
Alignment:
| Q |
93 |
aagttagagaaagttgtgttggcatcagacttaaataacttctcatccaatggttcctcttaatcgatt |
161 |
Q |
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| T |
13076855 |
aagtttgagaaagttgtgttggaattagacttagataacttctcatctaatggttcctcttaatcgatt |
13076923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 191
Target Start/End: Original strand, 11222612 - 11222658
Alignment:
| Q |
145 |
gttcctcttaatcgattgaatacttcctatgcttcaaatataacttc |
191 |
Q |
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| T |
11222612 |
gttcctcttaatcgattgtatactatttatgcttcaaatataacttc |
11222658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 8717708 - 8717750
Alignment:
| Q |
149 |
ctcttaatcgattgaatacttcctatgcttcaaatataacttc |
191 |
Q |
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| T |
8717708 |
ctcttaatcgattgtatactttttatgcttcaaatataacttc |
8717750 |
T |
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