View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11312_high_9 (Length: 216)
Name: NF11312_high_9
Description: NF11312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11312_high_9 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 3 - 201
Target Start/End: Complemental strand, 14548684 - 14548486
Alignment:
| Q |
3 |
aagtgcaagctcaaataacgcgatccaaacagacccatactgtatcacaaaagtcaacaaaataattatcttcataaaacagatgaggtgtatataccgc |
102 |
Q |
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| T |
14548684 |
aagtgcaagttcaaataactcaatccaaacagacccatactgtatcacaaaagtcaacaaaataattatcttcataaaacagatgaggtgtatataccgc |
14548585 |
T |
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| Q |
103 |
tgcagtactctagaacagtgcagaatgtgtttggatcaatctcaaagatgtcccataaaagaacaatatgacgatggatcaaggtcttgtgaatattat |
201 |
Q |
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| T |
14548584 |
tgcagtactctagaacagtgcagaatgtatttggatcaatctcaaagatgtcccataaacgaacaatatgacgatggatcaaggtcttgtgaatattat |
14548486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 37588323 - 37588124
Alignment:
| Q |
2 |
aaagtgcaagctcaaataacgcgatccaaacagacccatactgtatcacaaaagtcaacaaaataattatcttcataaaacagatgaggtgtatataccg |
101 |
Q |
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| T |
37588323 |
aaagtgcaagctcaaataactcaatccaaacagacccatagtctataacaaaagtaaacaaaataattatcttcataaaacatatgaggtgtatataccg |
37588224 |
T |
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| Q |
102 |
ctgcagtactctagaacagtgcagaatgtgtttggatcaatctcaaagatgtcccataaaagaacaatatgacgatggatcaaggtcttgtgaatattat |
201 |
Q |
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| T |
37588223 |
ctgcaatactctagaacagtgcagaatgtatttggatcaatctcaaagatgttccataaacgaacaatatgacgatggaccaaggtcttgtgaatattat |
37588124 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 37526162 - 37525963
Alignment:
| Q |
2 |
aaagtgcaagctcaaataacgcgatccaaacagacccatactgtatcacaaaagtcaacaaaataattatcttcataaaacagatgaggtgtatataccg |
101 |
Q |
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| T |
37526162 |
aaagtgcaagctcaaataactcaatccaaacagacccatagtctataacaaaagtaaacataacaattatcttcataaaacatatgaggtgtatataccg |
37526063 |
T |
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| Q |
102 |
ctgcagtactctagaacagtgcagaatgtgtttggatcaatctcaaagatgtcccataaaagaacaatatgacgatggatcaaggtcttgtgaatattat |
201 |
Q |
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| T |
37526062 |
ctgcaatactctagaacagtgcagaatgtatttggatcaatctcaaagatgtcccataaacgaacaatatgacgatggaccaaggtcttgtgaatattat |
37525963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 2 - 201
Target Start/End: Complemental strand, 37690599 - 37690400
Alignment:
| Q |
2 |
aaagtgcaagctcaaataacgcgatccaaacagacccatactgtatcacaaaagtcaacaaaataattatcttcataaaacagatgaggtgtatataccg |
101 |
Q |
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| T |
37690599 |
aaagtgcaagctcaaataactcaatccaaacagacccatagtctataacaaaagtaaacaaaataattatcttcaaaaaacatataaggtgtatataccg |
37690500 |
T |
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| Q |
102 |
ctgcagtactctagaacagtgcagaatgtgtttggatcaatctcaaagatgtcccataaaagaacaatatgacgatggatcaaggtcttgtgaatattat |
201 |
Q |
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| T |
37690499 |
ctgcaatactctagaacagtgcagaatgtatttggatcaatctcaaagatgtcccataaacgaacaatatgacgatggaccaaggtcttgtgaatattat |
37690400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 51 - 198
Target Start/End: Complemental strand, 37787869 - 37787722
Alignment:
| Q |
51 |
aaaagtcaacaaaataattatcttcataaaacagatgaggtgtatataccgctgcagtactctagaacagtgcagaatgtgtttggatcaatctcaaaga |
150 |
Q |
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| T |
37787869 |
aaaaggcaacaaaataagtatcttcataaaacagatgaggtgtatataccactacaatattctagaacagtgcagaatgtatccggatcaatttgaaaga |
37787770 |
T |
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| Q |
151 |
tgtcccataaaagaacaatatgacgatggatcaaggtcttgtgaatat |
198 |
Q |
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| T |
37787769 |
tgtcccataaacgaacaatgtggcgatggaccaaggtcttgtgaatat |
37787722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 9 - 201
Target Start/End: Complemental strand, 37794660 - 37794466
Alignment:
| Q |
9 |
aagctcaaataacgcgatccaaacagacccatactgtatcacaaaagtcaacaaaataattatcttcataaaacagatgaggtgtatata--ccgctgca |
106 |
Q |
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| T |
37794660 |
aagctcaaataactcaatccaaacagactcgtaatctaccaaaaaagtcagcaaaatagttgttttaaaaaaacaagtgaggtgtatatataccactaca |
37794561 |
T |
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| Q |
107 |
gtactctagaacagtgcagaatgtgtttggatcaatctcaaagatgtcccataaaagaacaatatgacgatggatcaaggtcttgtgaatattat |
201 |
Q |
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| T |
37794560 |
aaactccagaacagtgcagaatgtatttggatcaatcttaaagatgtcccataaacgaacaatatgacgatgaaccaaggtcttgtgaatattat |
37794466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 8 - 201
Target Start/End: Complemental strand, 37618893 - 37618698
Alignment:
| Q |
8 |
caagctcaaataacgcgatccaaacagacccatactgtatcacaaaagtcaacaaaataattatcttcataaaacagatgaggtgtatata--ccgctgc |
105 |
Q |
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|||||||||||||| | |||||||||||| | || | || || |||||||| ||||||| | | || | |||||| ||||||||||||| || || | |
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| T |
37618893 |
caagctcaaataactcaatccaaacagactcgtaatctaccaaaaaagtcagcaaaatagtcgttttaagaaaacaagtgaggtgtatatataccactac |
37618794 |
T |
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| Q |
106 |
agtactctagaacagtgcagaatgtgtttggatcaatctcaaagatgtcccataaaagaacaatatgacgatggatcaaggtcttgtgaatattat |
201 |
Q |
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| T |
37618793 |
aaaactccagaacagtgcagaatgtatttggatcaatcttaaagatgtcccataaacgaacaatatgacgatgaaccaaggtcttgtgaatattat |
37618698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 37611139 - 37611060
Alignment:
| Q |
51 |
aaaagtcaacaaaataattatcttcataaaacagatgaggtgtatataccgctgcagtactctagaacagtgcagaatgt |
130 |
Q |
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| T |
37611139 |
aaaaggcaacaaaataagtatcttcataaaacagatgaggtgtatataccactacaatattctagaacagtgcagaatgt |
37611060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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