View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11312_low_1 (Length: 686)

Name: NF11312_low_1
Description: NF11312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11312_low_1
NF11312_low_1
[»] scaffold0005 (2 HSPs)
scaffold0005 (131-669)||(19450-19988)
scaffold0005 (23-126)||(19120-19223)
[»] chr4 (2 HSPs)
chr4 (131-669)||(14819724-14820262)
chr4 (23-126)||(14820489-14820592)
[»] chr1 (2 HSPs)
chr1 (182-527)||(12058230-12058571)
chr1 (43-122)||(12058856-12058935)
[»] chr2 (7 HSPs)
chr2 (170-370)||(32145929-32146129)
chr2 (153-388)||(977-1212)
chr2 (153-388)||(21332860-21333095)
chr2 (251-388)||(21342748-21342885)
chr2 (21-122)||(32146411-32146513)
chr2 (468-524)||(21332724-21332780)
chr2 (468-524)||(21342612-21342668)
[»] scaffold0290 (1 HSPs)
scaffold0290 (462-597)||(2590-2725)
[»] chr7 (1 HSPs)
chr7 (43-126)||(15559659-15559742)
[»] chr6 (1 HSPs)
chr6 (43-122)||(15593246-15593325)


Alignment Details
Target: scaffold0005 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 131 - 669
Target Start/End: Original strand, 19450 - 19988
Alignment:
Q  131 gtccttccatgtttctccctaattatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctctt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19450 gtccttccatgtttctccctaattatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctctt 19549  T
Q  231 ttccttgtttcaaaagtactgaacttgaatcttcagaacttcatatccggataaggctcgagtattgtcatcttctcttgactagtacctctttattcgg 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19550 ttccttgtttcaaaagtactgaacttgaatcttcagaacttcatattcggataaggctcgagtattgtcatcttctcctgactagtacctctttattcgg 19649  T
Q  331 ataccagttattacacttgatgactcgatcattaccctgagttgtgaggaagaaccttctggaacttatgcgtatttctcttattccatacataaccctt 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  19650 ataccagttattacacttgatgactcgatcattaccctgagttgtgaggaagaaccttatggaacttatgcgtatttctcttatttcatacataaccctt 19749  T
Q  431 tcttagccgactgacggttcttgcgcgtactttgacatcaccaagtaagcaacctgattactacactgaaggtgactccaatctctcttgacttacttag 530  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19750 tcttagccgactgacagttcttgcgcgtactttgacatcaccaactaagcaacctgattactacactgaaggtgactccaatctctcttgacttacttag 19849  T
Q  531 gtaaagccacatccatcccactcttatcacgtcttttatcgactatccgagtttcactactttgaacctgatgcttcaagacttcctactcaattcttaa 630  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19850 gtaaaggcacatccatcccactcttatcacgccttttatcgactatccgagtttcactactttgaacctgatgcttcaagacttcttactcaattcttaa 19949  T
Q  631 tgcctcacattggaaaccatacttgctggttctgacatt 669  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  19950 tgcttcacattggaaaccatacttgctggttctgacatt 19988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 23 - 126
Target Start/End: Original strand, 19120 - 19223
Alignment:
Q  23 acgagtcaacacattttaggaagttgtgcaactcgcccgaagctcgctcatggcgagttggctatggagtatacatgctttaagcgagtttactcgctta 122  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  19120 acgagtcaacacattttaggaagttgtgcaactcgccccaaactcgctcatggcgagttggctctggagtatacacgctttaagcgagtttactcgctta 19219  T
Q  123 cggc 126  Q
    ||||    
T  19220 cggc 19223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 131 - 669
Target Start/End: Complemental strand, 14820262 - 14819724
Alignment:
Q  131 gtccttccatgtttctccctaattatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctctt 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14820262 gtccttccatgtttctccctaattatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctctt 14820163  T
Q  231 ttccttgtttcaaaagtactgaacttgaatcttcagaacttcatatccggataaggctcgagtattgtcatcttctcttgactagtacctctttattcgg 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14820162 ttccttgtttcaaaagtactgaacttgaatcttcagaacttcatattcggataaggctcgagtattgtcatcttctcctgactagtacctctttattcgg 14820063  T
Q  331 ataccagttattacacttgatgactcgatcattaccctgagttgtgaggaagaaccttctggaacttatgcgtatttctcttattccatacataaccctt 430  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  14820062 ataccagttattacacttgatgactcgatcattaccctgagttgtgaggaagaaccttatggaacttatgcgtatttctcttatttcatacataaccctt 14819963  T
Q  431 tcttagccgactgacggttcttgcgcgtactttgacatcaccaagtaagcaacctgattactacactgaaggtgactccaatctctcttgacttacttag 530  Q
    ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14819962 tcttagccgactgacagttcttgcgcgtactttgacatcaccaactaagcaacctgattactacactgaaggtgactccaatctctcttgacttacttag 14819863  T
Q  531 gtaaagccacatccatcccactcttatcacgtcttttatcgactatccgagtttcactactttgaacctgatgcttcaagacttcctactcaattcttaa 630  Q
    |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  14819862 gtaaaggcacatccatcccactcttatcacgccttttatcgactatccgagtttcactactttgaacctgatgcttcaagacttcttactcaattcttaa 14819763  T
Q  631 tgcctcacattggaaaccatacttgctggttctgacatt 669  Q
    ||| |||||||||||||||||||||||||||||||||||    
T  14819762 tgcttcacattggaaaccatacttgctggttctgacatt 14819724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 23 - 126
Target Start/End: Complemental strand, 14820592 - 14820489
Alignment:
Q  23 acgagtcaacacattttaggaagttgtgcaactcgcccgaagctcgctcatggcgagttggctatggagtatacatgctttaagcgagtttactcgctta 122  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||    
T  14820592 acgagtcaacacattttaggaagttgtgcaactcgccccaaactcgctcatggcgagttggctctggagtatacacgctttaagcgagtttactcgctta 14820493  T
Q  123 cggc 126  Q
    ||||    
T  14820492 cggc 14820489  T

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Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 182 - 527
Target Start/End: Complemental strand, 12058571 - 12058230
Alignment:
Q  182 gcataacataaatcatgaaggatccttgtcccacatgacgacatctcttttccttgtttcaaaagtactgaacttgaatcttcagaacttcatatccgga 281  Q
    ||||||||||||||||| ||||||||||  ||||||| ||||||||| || ||||| | ||| | |  ||||  ||||||||| |||| |||||| || |    
T  12058571 gcataacataaatcatgtaggatccttgatccacatggcgacatctcgttcccttgctccaagaatgatgaatctgaatcttc-gaacatcatattcgaa 12058473  T
Q  282 taaggctcgagtattgtcatcttctcttgactagtacctctttattcggataccagttattacacttgatgactcgatcattaccctgagttgtgaggaa 381  Q
    ||| ||||||||||||| |  ||||| ||| | ||| |||||  |||| |||||  |||| |||||||||||||||||||||||  ||||| |  || ||    
T  12058472 taatgctcgagtattgttactttctcctgagtggtatctcttc-ttcgaataccgattatcacacttgatgactcgatcattactttgagtcgcaag-aa 12058375  T
Q  382 gaaccttctggaacttatgcgtatttctcttattcca-tacataaccctttcttagccgactgacggttcttgcgcgtactttgacatcaccaagtaagc 480  Q
    |||||||||| | ||||   ||||||||||| |   | |||||| || ||||| ||||||||||| ||||||||||||| || ||||||||||| |||||    
T  12058374 gaaccttctgaatcttacatgtatttctcttgtcttagtacatacccttttct-agccgactgaccgttcttgcgcgta-ttcgacatcaccaactaagc 12058277  T
Q  481 aacctgattactacactgaaggtgactccaatctctcttgacttact 527  Q
    |||| ||||||||||||  ||||||||||||||| ||||||||||||    
T  12058276 aacccgattactacacttgaggtgactccaatctttcttgacttact 12058230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 12058935 - 12058856
Alignment:
Q  43 aagttgtgcaactcgcccgaagctcgctcatggcgagttggctatggagtatacatgctttaagcgagtttactcgctta 122  Q
    ||||||||  |||||||| |||||| |  |||||||||||||| |||||| | || || ||||| |||||||||||||||    
T  12058935 aagttgtgtgactcgccccaagctccccaatggcgagttggctctggagtttgcacgccttaagtgagtttactcgctta 12058856  T

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Target: chr2 (Bit Score: 78; Significance: 6e-36; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 170 - 370
Target Start/End: Complemental strand, 32146129 - 32145929
Alignment:
Q  170 acatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctcttttccttgtttcaaa-agtactgaacttgaatcttcagaa 268  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||| | | |||  |||| || | |||||||||||||||||||||     
T  32146129 acatacattattgcataacataaatcatgaaggattcttgacccacatgacaacatct-tctccctcatttccaagaatactgaacttgaatcttcagag 32146031  T
Q  269 cttcatatccggataaggctcgagtattgtcatcttctcttgactagtacctctttattcggataccagttattacacttgatgactcgatcattaccct 368  Q
    |||||||||||||||| ||   ||||||| ||||||||| |||  ||||||| |||||||| | | | |||||||||||||| |||| || | |||||||    
T  32146030 cttcatatccggataaagcctaagtattgccatcttctcctgagcagtacctatttattcgaacatcggttattacacttgacgacttgaacgttaccct 32145931  T
Q  369 ga 370  Q
    ||    
T  32145930 ga 32145929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 153 - 388
Target Start/End: Complemental strand, 1212 - 977
Alignment:
Q  153 ttatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctcttttccttgtttcaaaagtactga 252  Q
    ||||||||||| || | ||| |||||| ||||||||||||||||||  | ||| ||| | |||||||||||||||| ||  |||| ||||| || | |||    
T  1212 ttatatgtatacctcagacagacattactgcataacataaatcatgtggaatcgttgactcacatgacgacatctcattcacttgcttcaagagcattga 1113  T
Q  253 acttgaatcttcagaacttcatatccggataaggctcgagtattgtcatcttctcttgactagtacctctttattcggataccagttattacacttgatg 352  Q
    ||||||||| ||| ||||| |||||| |||||||||||||||| || |||||||| |||  | ||| ||||||||| |||| | ||||| ||||| ||||    
T  1112 acttgaatcctcaaaactttatatccagataaggctcgagtatcgttatcttctcctgagaaatacttctttattcagatatcggttataacactcgatg 1013  T
Q  353 actcgatcattaccctgagttgtgaggaagaacctt 388  Q
    ||| |||   |||||||||| |  ||||||||||||    
T  1012 acttgattgctaccctgagtcgcaaggaagaacctt 977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 153 - 388
Target Start/End: Complemental strand, 21333095 - 21332860
Alignment:
Q  153 ttatatgtatatcttaaacatacattattgcataacataaatcatgaaggatccttgtcccacatgacgacatctcttttccttgtttcaaaagtactga 252  Q
    ||||||||||| || | ||| |||||| ||| ||||||||||||||  | ||||||| | |||||||||||||||| ||  |||| ||||| || | |||    
T  21333095 ttatatgtatacctcagacagacattactgcgtaacataaatcatgtggaatccttgactcacatgacgacatctcattcacttgcttcaagagcattga 21332996  T
Q  253 acttgaatcttcagaacttcatatccggataaggctcgagtattgtcatcttctcttgactagtacctctttattcggataccagttattacacttgatg 352  Q
    ||||||||| ||||||||| |||||| |||||||||||||||| || || ||||| |||  | ||| ||||||||| |||||| ||||| ||||| ||||    
T  21332995 acttgaatcctcagaactttatatccagataaggctcgagtatcgttattttctcctgagaaatacttctttattcagataccggttataacactcgatg 21332896  T
Q  353 actcgatcattaccctgagttgtgaggaagaacctt 388  Q
    ||| |||   |||| ||||| |  ||||||||||||    
T  21332895 acttgattgctaccttgagtcgcaaggaagaacctt 21332860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 251 - 388
Target Start/End: Complemental strand, 21342885 - 21342748
Alignment:
Q  251 gaacttgaatcttcagaacttcatatccggataaggctcgagtattgtcatcttctcttgactagtacctctttattcggataccagttattacacttga 350  Q
    |||| |||||| ||||||||| |||||  || ||||||||||||| || ||| |||| |||  | ||| |||||||||||||||| ||||| ||||| ||    
T  21342885 gaacatgaatcctcagaactttatatctagaaaaggctcgagtatcgttatcctctcctgagaaatacatctttattcggataccggttataacactcga 21342786  T
Q  351 tgactcgatcattaccctgagttgtgaggaagaacctt 388  Q
    ||||| |||   |||| ||||| |  ||||||||||||    
T  21342785 tgacttgattgctaccttgagtcgcaaggaagaacctt 21342748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 122
Target Start/End: Complemental strand, 32146513 - 32146411
Alignment:
Q  21 ggacgagtcaacacatttt-aggaagttgtgcaactcgcccgaagctcgctcatggcgagttggctatggagtatacatgctttaagcgagtttactcgc 119  Q
    ||||||||||||||||||| || |||||||||||||| ||| |||| |||  |||||||||||||| || ||| | || || ||||  |||| |||||||    
T  32146513 ggacgagtcaacacatttttagaaagttgtgcaactcaccccaagcccgcctatggcgagttggctctgaagtttgcacgccttaaatgagtatactcgc 32146414  T
Q  120 tta 122  Q
    |||    
T  32146413 tta 32146411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 468 - 524
Target Start/End: Complemental strand, 21332780 - 21332724
Alignment:
Q  468 tcaccaagtaagcaacctgattactacactgaaggtgactccaatctctcttgactt 524  Q
    ||||||| ||||||||| |||||   ||| |||||||||||||| ||||||||||||    
T  21332780 tcaccaactaagcaacccgattaacgcaccgaaggtgactccaaactctcttgactt 21332724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 468 - 524
Target Start/End: Complemental strand, 21342668 - 21342612
Alignment:
Q  468 tcaccaagtaagcaacctgattactacactgaaggtgactccaatctctcttgactt 524  Q
    ||||||| ||||||||| |||||   ||| |||||||||||||| ||||||||||||    
T  21342668 tcaccaactaagcaacccgattaacgcaccgaaggtgactccaaactctcttgactt 21342612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0290 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 462 - 597
Target Start/End: Complemental strand, 2725 - 2590
Alignment:
Q  462 ttgacatcaccaagtaagcaacctgattactacactgaaggtgactccaatctctcttgacttacttaggtaaagccacatccatcccactcttatcacg 561  Q
    ||||||||||| | | ||| |||||||||| | | |||||||||| | |||||||||||| |||||  ||| | | ||||||||||  | ||||| ||||    
T  2725 ttgacatcaccgactgagccacctgattaccatattgaaggtgaccctaatctctcttgatttactcgggtgaggacacatccatcatattcttaccacg 2626  T
Q  562 tcttttatcgactatccgagtttcactactttgaac 597  Q
     |||| |||||||||||||||||  |||| ||||||    
T  2625 cctttcatcgactatccgagttttgctaccttgaac 2590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 126
Target Start/End: Complemental strand, 15559742 - 15559659
Alignment:
Q  43 aagttgtgcaactcgcccgaagctcgctcatggcgagttggctatggagtatacatgctttaagcgagtttactcgcttacggc 126  Q
    ||||||||| |||||||| ||||||||  ||||| |||||||| |||||| | || || ||||| |||||||||||||||||||    
T  15559742 aagttgtgcgactcgccccaagctcgccaatggctagttggctctggagtttgcacgccttaagtgagtttactcgcttacggc 15559659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 15593325 - 15593246
Alignment:
Q  43 aagttgtgcaactcgcccgaagctcgctcatggcgagttggctatggagtatacatgctttaagcgagtttactcgctta 122  Q
    |||||||| |||| |||| | ||||||| |||| ||||||||| |||||| |||| |||||||||||||||||| |||||    
T  15593325 aagttgtgaaacttgccccaggctcgcttatggtgagttggctttggagtttacacgctttaagcgagtttacttgctta 15593246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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