View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11312_low_2 (Length: 542)
Name: NF11312_low_2
Description: NF11312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11312_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 27 - 373
Target Start/End: Complemental strand, 52080734 - 52080388
Alignment:
| Q |
27 |
tcatgatcaagaaactagatattgagagtttgaatctctttaatgagcggttaacttgtgaagaacgtgatgactttaagaagaagtatggaaagatctt |
126 |
Q |
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| T |
52080734 |
tcatgatcaagaaactagatattgagagtttgaatctctttattgagcggttaacttgtgaagaacgtgatgactttaagaagaagtatggaaagatctt |
52080635 |
T |
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| Q |
127 |
ggatttgttaagggtagatgtttagatagaggcactttcatgcttattacaattctatgacccatcttataggtaaggaaaacatgaatacaaccagtgg |
226 |
Q |
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| T |
52080634 |
ggatttgttaagggtggatgtttagatagaggcactttcctgcttattacaattctatgacccaccttataggtaaggaaaacacgaatacaaccagtgg |
52080535 |
T |
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| Q |
227 |
tatcaaaaggcagtacttagaggatctgttgaaagccttagctaataatggagaatggaaaaaagtttatggatatgttggctttgacgatctatggttt |
326 |
Q |
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| T |
52080534 |
tatcaaaaggcagtacttagaggatctgttgaaagccttagctaataatggagaatggaaaaaagtttatggatatgttggctttgacgatctatggttt |
52080435 |
T |
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| Q |
327 |
ggctttgtttccaagtgcagataatgtgattcgtttggcagcaatat |
373 |
Q |
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| T |
52080434 |
agctttgtttccaagtgcagataatgtgattagtttggcagcaatat |
52080388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 371 - 532
Target Start/End: Complemental strand, 52079019 - 52078852
Alignment:
| Q |
371 |
tattttaagtatgtgttcacacgtgtgtatatgag------cgtgcgtacgtacgtggtattacttaatacaaaatttgaataccaattttatacttcac |
464 |
Q |
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| T |
52079019 |
tattttaagtgtgtgtttacacgtgtgtgtatgtgtgcgtgcgtgcgtacgtacatggtattacttaatacaaaattataataccaattttatatttcac |
52078920 |
T |
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| Q |
465 |
acagaacaatattcaaaatcttagagacgacgctgcttatccaaagattgattagtttagtctctctg |
532 |
Q |
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| T |
52078919 |
acacaataatattcaaaatcttagagacgacactgattatctgaagattgattagtttaatctctctg |
52078852 |
T |
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