View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11312_low_4 (Length: 338)
Name: NF11312_low_4
Description: NF11312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11312_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 19 - 331
Target Start/End: Original strand, 36223185 - 36223497
Alignment:
| Q |
19 |
atgaagtaacataaaaattaatattatgaaaattggcttaggtgtgttctaagagaaggaagcttttaccacaggttgcatacggttcttgccaataggg |
118 |
Q |
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| T |
36223185 |
atgaagtaacataaaaattaatattatgaaaattggcttaggtgtgttctaagagaaggaagcttttaccacaggttgcatacggttcttgccaataggg |
36223284 |
T |
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| Q |
119 |
tattgatcatagtttggtttactcatagtatgagaagtgaaccaaagtataaatccagacaagagatccaagagtgagtccaaagttgatgcaatcacag |
218 |
Q |
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| T |
36223285 |
tattgatcatagtttggtttactcatagtatgagaagtgaaccaaagtataaatccagacaagagatccaagagtgagtccaaagttgatgcaatcacag |
36223384 |
T |
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| Q |
219 |
ccaaagatctactttgaattgaagcataaacttttgctacaaatagcaccatgttccctatgttagataaataaattgccaccttctcattcctttcaag |
318 |
Q |
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| T |
36223385 |
ccaaagatctactttgaattgaagcataaacttttgctacaaatagcaccatgttccctatgttagataaataaattgccaccttctcattcctttcaag |
36223484 |
T |
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| Q |
319 |
ttgcttcatctca |
331 |
Q |
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| T |
36223485 |
ttgcttcatctca |
36223497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 154 - 269
Target Start/End: Original strand, 18644946 - 18645061
Alignment:
| Q |
154 |
agtgaaccaaagtataaatccagacaagagatccaagagtgagtccaaagttgatgcaatcacagccaaagatctactttgaattgaagcataaactttt |
253 |
Q |
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| T |
18644946 |
agtgaaccacaatatgaaccccgacaaaagatccaagagagaatccaaggtggaagcaatcacagctaatgatctgctctcaattgatgcatataccttc |
18645045 |
T |
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| Q |
254 |
gctacaaatagcacca |
269 |
Q |
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| T |
18645046 |
gctgcaaatagcacca |
18645061 |
T |
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