View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11312_low_6 (Length: 321)
Name: NF11312_low_6
Description: NF11312
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11312_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 19 - 252
Target Start/End: Original strand, 34455369 - 34455602
Alignment:
| Q |
19 |
acaaaattctaagattcgtactactacaccaacataaaatggccatgattcattgcttggatctaccactgctatgattaaagaacttgatgaatccggc |
118 |
Q |
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| T |
34455369 |
acaaaattctaagattcgtactactacaccaacataaaatggccatgattcattgcttggatctaccactgctatgattaaagaacttgatgaatccggc |
34455468 |
T |
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| Q |
119 |
caacattttctgatgaagaaaataatgacaaacttgaaaacaataataacgatggactaattgaaatgccgtaaattgatgaatcatctaaagatagcaa |
218 |
Q |
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| T |
34455469 |
caacattttctgatgaagaaaataatgacaaacttgaaaacaataataacgatggactaattgaaatgccgtaaattgatgaatcatctaaagatagcaa |
34455568 |
T |
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| Q |
219 |
gttccaagtaggacacgagatttggaaaggaaag |
252 |
Q |
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| T |
34455569 |
gttccaagtaggacacgagatttggaaaggaaag |
34455602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 34455618 - 34455662
Alignment:
| Q |
271 |
aggaagatccaagaataagacaacgaatccacatttcaacattgc |
315 |
Q |
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| T |
34455618 |
aggaagaaccaagaataagacaatgaatccacatttcaacattgc |
34455662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 205
Target Start/End: Original strand, 56516631 - 56516778
Alignment:
| Q |
58 |
tggccatgattcattgcttggatctaccactgctatgattaaagaacttgatgaatccg-gccaacattttctgatgaagaaaataatgacaaacttgaa |
156 |
Q |
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| T |
56516631 |
tggccatgattcattacctgaacctacttctgctatgagtaa-gaacttggtgaatctgtgtctacattttctcacgaagaaaacaatgagaatcttgaa |
56516729 |
T |
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| Q |
157 |
aacaataataacgatggactaattgaaatgccgtaaattgatgaatcat |
205 |
Q |
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| T |
56516730 |
aatgatagtaatgatgaactaattgaaatgccacaaaatgatgagtcat |
56516778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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