View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11313_high_1 (Length: 237)
Name: NF11313_high_1
Description: NF11313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11313_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 27281832 - 27282004
Alignment:
| Q |
49 |
agcatacccaaatccacctccccctcaaccatgttgcgatgcagttctcgatgtaactgcccaagccagaactcgcgaagatcgtcaagctgtttgcagt |
148 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27281832 |
agcatacccaaatccacctccccctcaaccatgttgcgatgcagttctcgatgtaactgcccaagccagaactcgcgaagatcgtcaagctgtttgcagt |
27281931 |
T |
|
| Q |
149 |
tgcctcaaaggccttatgatcggcatacctggactcgatcttaccgccttggctgccctccctaaagtctgtg |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27281932 |
tgcctcaaaggccttatgatcggcatacctggactcgatcttaccgccttggctgccctccctaaagtctgtg |
27282004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 49 - 221
Target Start/End: Original strand, 27296300 - 27296472
Alignment:
| Q |
49 |
agcatacccaaatccacctccccctcaaccatgttgcgatgcagttctcgatgtaactgcccaagccagaactcgcgaagatcgtcaagctgtttgcagt |
148 |
Q |
| |
|
|||| |||||| |||| ||||||||||| ||||||| ||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27296300 |
agcacacccaactccatctccccctcaaaattgttgcgctgcagttcttgatgtaactggccaagccataactcgcgaagatcgtcaagctgtttgcagt |
27296399 |
T |
|
| Q |
149 |
tgcctcaaaggccttatgatcggcatacctggactcgatcttaccgccttggctgccctccctaaagtctgtg |
221 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
27296400 |
tgcctcaaaggccttatgaacggcatacctggactcgatcttaccgccttggcttccctccctaaagtctgtg |
27296472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 118 - 212
Target Start/End: Original strand, 27271790 - 27271884
Alignment:
| Q |
118 |
aactcgcgaagatcgtcaagctgtttgcagttgcctcaaaggccttatgatcggcatacctggactcgatcttaccgccttggctgccctcccta |
212 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||| |||||| |
|
|
| T |
27271790 |
aactcgcgaagatcgtcaagcggtttgcaaatgccttttaggccttatgaatggcatacctgggctcgatcttaccgcctttgctgccgtcccta |
27271884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 27249295 - 27249390
Alignment:
| Q |
126 |
aagatcgtcaagctgtttgcagttgcctcaaaggccttatgatcggcatacctggactcgatcttaccgccttggctgccctccctaaagtctgtg |
221 |
Q |
| |
|
||||||||| || ||||||| ||||||||||| | | ||| |||||||||||||||| ||||| | ||| | ||| |||||||||||| ||||| |
|
|
| T |
27249295 |
aagatcgtcgagatgtttgcggttgcctcaaatccatgatgggcggcatacctggactcaatcttcctgccattgcttccctccctaaagactgtg |
27249390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University