View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11313_high_10 (Length: 334)
Name: NF11313_high_10
Description: NF11313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11313_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 101; Significance: 5e-50; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 162 - 278
Target Start/End: Original strand, 53679678 - 53679794
Alignment:
| Q |
162 |
gggagattgagaatgatgatttcatgaaaagtagaaatatgtgaagattgttgaatgaatggtttttggatttacatggaagagaagaaagggaagaaga |
261 |
Q |
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| T |
53679678 |
gggagattgagaatgacgatttcatgaaaagtagaaataagtgaagattgttaaatgaatggtatttggatttacatggaagagaagaaagggaagaaga |
53679777 |
T |
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| Q |
262 |
tctatacacacaggttc |
278 |
Q |
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| T |
53679778 |
tctatacacacaggttc |
53679794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 53679517 - 53679605
Alignment:
| Q |
1 |
aattaggttctatttctgatctaaatggatggattttcaagaaaatcaaacgaaagtaagaaaggtgattcaatgttgattaagcaggt |
89 |
Q |
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| T |
53679517 |
aattaggttctatttctgatctaaatggatggattttcaagaaaatcaaacgaaagtaagaaaggtgattcggtgttgattaagcaggt |
53679605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 321
Target Start/End: Original strand, 25730209 - 25730238
Alignment:
| Q |
292 |
gatgttgtgtattgtttttaaaataaatgg |
321 |
Q |
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| T |
25730209 |
gatgttgtgtattgtttttaaaataaatgg |
25730238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 207 - 274
Target Start/End: Complemental strand, 19266212 - 19266145
Alignment:
| Q |
207 |
gattgttgaatgaatggtttttggatttacatggaagagaagaaagggaagaagatctatacacacag |
274 |
Q |
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| T |
19266212 |
gattgttgaatgaatggaatttggatttacagagaagagaagaaaaggaagaagatccgtacacacag |
19266145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 212 - 269
Target Start/End: Complemental strand, 32375255 - 32375198
Alignment:
| Q |
212 |
ttgaatgaatggtttttggatttacatggaagagaagaaagggaagaagatctataca |
269 |
Q |
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| T |
32375255 |
ttgaatgaatgatatttggatttacagagaagagaagaaaaggaagaagatccataca |
32375198 |
T |
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