View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11313_high_12 (Length: 310)
Name: NF11313_high_12
Description: NF11313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11313_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 3 - 303
Target Start/End: Complemental strand, 34826911 - 34826611
Alignment:
| Q |
3 |
aaggtcatgtgcatattcaaggtttatctgttctgattaatcgctgttccgctgaataattagacatttgtagggtctaaagcatggatatttgccggtt |
102 |
Q |
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| T |
34826911 |
aaggtcatgtgcatattcaaggtttatctgttctgattaatcgctgttccgctgaataattagacatttgtagggtctaaagcatggatatttgccggtt |
34826812 |
T |
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| Q |
103 |
caattcctgtttcttcttgtggttgcgggactggatggttcaatgaaccaaacaatatctcttttaactagggaggctagtgtagtaaaattgtgggtaa |
202 |
Q |
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| T |
34826811 |
caattcctgtttcttcttgtggttgcgggactggatggttcaatgaaccaaacaatatctcttttaactagggaggctagtgtagtaaaattgtgggtaa |
34826712 |
T |
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| Q |
203 |
tgaagattgttctaagatgatttgagttagcttctggtttgaaagtgagattctctaaaagtagactttctagtgtaaatgtcgattcttccttcatctc |
302 |
Q |
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| T |
34826711 |
tgaagattgttctaagatgatttgagttagcttctggtttgaacgtgagattctctaaaagtagactttctagtgtaaatgtcgaatcttccttcatctc |
34826612 |
T |
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| Q |
303 |
a |
303 |
Q |
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| T |
34826611 |
a |
34826611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 6843087 - 6843144
Alignment:
| Q |
244 |
aaagtgagattctctaaaagtagactttctagtgtaaatgtcgattcttccttcatct |
301 |
Q |
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| T |
6843087 |
aaagtgagattctctaagagtatactttctgatgtaaacgtcgattcttcctttatct |
6843144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 244 - 301
Target Start/End: Complemental strand, 9661908 - 9661851
Alignment:
| Q |
244 |
aaagtgagattctctaaaagtagactttctagtgtaaatgtcgattcttccttcatct |
301 |
Q |
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||||||||||||||||| |||| ||||||| || |||| |||||||||||||| |||| |
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| T |
9661908 |
aaagtgagattctctaagagtatactttctggtataaacgtcgattcttcctttatct |
9661851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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