View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11313_high_13 (Length: 306)
Name: NF11313_high_13
Description: NF11313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11313_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 268; Significance: 1e-149; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 21 - 304
Target Start/End: Complemental strand, 11119399 - 11119116
Alignment:
| Q |
21 |
gagggcacactagcaagatccaattcagaagatttcttgttaacaaaattgctctgctttctaatttctcctttctttccagtaagcacgccaatattac |
120 |
Q |
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| T |
11119399 |
gaggtcacactagcaagatccaattcagaagatttcttgttaacaaaattgcactgctttctaatttctcctttctttccagtaagcacgccaatattac |
11119300 |
T |
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| Q |
121 |
ccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaa |
220 |
Q |
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| T |
11119299 |
ccattttaatcattgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaa |
11119200 |
T |
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| Q |
221 |
caattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
304 |
Q |
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| T |
11119199 |
caattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtcgaatttatcgggagttgttgg |
11119116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 34 - 304
Target Start/End: Complemental strand, 11111615 - 11111345
Alignment:
| Q |
34 |
caagatccaattcagaagatttcttgttaacaaaattgctctgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcat |
133 |
Q |
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|||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
11111615 |
caagatccaattcagaagatttcttgttaataaaattgcattgttttctaatttctcctttctttccggtaagcacatcaatattacccattttaatcat |
11111516 |
T |
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| Q |
134 |
tgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtca |
233 |
Q |
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| T |
11111515 |
tgaatttataaagttctgaaagaaaacattttggctatttgcaaagctgttgacaatgctaatggtatctgcacccggtgttgagaataattcttggtca |
11111416 |
T |
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| Q |
234 |
ctttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||| ||||| |
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| T |
11111415 |
ctttgaagcaaaccctttttaccttgaagattgttgtagaagttcttgtccaatgtatcaggagtcgttgg |
11111345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 33 - 304
Target Start/End: Original strand, 10793178 - 10793449
Alignment:
| Q |
33 |
gcaagatccaattcagaagatttcttgttaacaaaattgctctgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatca |
132 |
Q |
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| T |
10793178 |
gcaagatctaactcagaagattttttgttaacaaaattgcattgtttccttatttctcctttctttccggtaagcacaccaatattacccattttaatca |
10793277 |
T |
|
| Q |
133 |
ttgaatttataaagttctggaagaaaacattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtc |
232 |
Q |
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||| || ||||| ||| |||||| || ||||||| || ||||||| || ||||||||| ||||||||||| |||||||| |||||||||||||| |
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| T |
10793278 |
ttgctttcttaaagctctcaaagaaagcactttggttattggcaaagttattaacaatgctagtggtatctgcatttggtgttgaaaacaattcttggtc |
10793377 |
T |
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| Q |
233 |
actttgaagcaaaccctttttaccttgaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
304 |
Q |
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| T |
10793378 |
actttgaagcaaaccctttttaacctgaagattgttgtagaagttcttgtccaatgtatcaggagtagttgg |
10793449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 59 - 304
Target Start/End: Complemental strand, 11156842 - 11156597
Alignment:
| Q |
59 |
gttaacaaaattgctctgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaa |
158 |
Q |
| |
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||||||||| |||| || |||||||| ||||||||| | || || ||||| |||||||| |||||||||||||||| | ||||| ||| |||||| |
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| T |
11156842 |
gttaacaaagttgcattgttttctaatctctcctttcgtccctgttagcacaccaatattgcccattttaatcattgcagccttaaagctctcaaagaaa |
11156743 |
T |
|
| Q |
159 |
acattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttacctt |
258 |
Q |
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| T |
11156742 |
gcgttttgatcggtgctgaatttgttgacaatgctaatggtatctgcaccggatgttgagaacaactcttgatcactttggagcaagccctttttcactt |
11156643 |
T |
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| Q |
259 |
gaagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
304 |
Q |
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|||||||| ||| ||||||||||| |||||||||||||| ||||| |
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| T |
11156642 |
gaagattggagtaatagttcttgtcaaatttatcaggagtcgttgg |
11156597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 11146089 - 11145960
Alignment:
| Q |
175 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta |
274 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| | |||||||||||| ||||| ||||||||||||||||| ||||| |||||||||| ||| || |
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| T |
11146089 |
caaagttgttgacaatgctaatggtatcagcaccagatgttgagaacaactcttgatcactttgaagcaaaccttttttcacttgaagattagagtaata |
11145990 |
T |
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| Q |
275 |
gttcttgtctaatttatcaggagttgttgg |
304 |
Q |
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||||||||| |||||||||||||| ||||| |
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| T |
11145989 |
gttcttgtcaaatttatcaggagtagttgg |
11145960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 304
Target Start/End: Complemental strand, 11137899 - 11137655
Alignment:
| Q |
60 |
ttaacaaaattgctctgctttctaatttctcctttctttccagtaagcacgccaatattacccattttaatcattgaatttataaagttctggaagaaaa |
159 |
Q |
| |
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||||||||||||| || |||||||| |||||||| || || || ||||| ||||||||||||||||||||||| | | |||| | | |||||| |
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| T |
11137899 |
ttaacaaaattgcaatgttttctaatctctccttttttcccggtcagcacaccaatattacccattttaatcatggcggcttcaaagctatcaaagaaag |
11137800 |
T |
|
| Q |
160 |
cattttggttgtttccaaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttg |
259 |
Q |
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|||||| || | || ||||||||||||||||||||||| ||||| | ||| ||||| | ||||||||||| |||||||||||||||||||| || |
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| T |
11137799 |
catttttgtcagcactgaacttgttgacaatgctaatggtatcagcaccagatgtcgagaaaagctcttggtcactctgaagcaaaccctttttaccctg |
11137700 |
T |
|
| Q |
260 |
aagattgttgtagtagttcttgtctaatttatcaggagttgttgg |
304 |
Q |
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||||||| ||||||||||||||| |||||||||||||| ||||| |
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| T |
11137699 |
aagattggagtagtagttcttgtcaaatttatcaggagtcgttgg |
11137655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 11150058 - 11149929
Alignment:
| Q |
175 |
caaagttgttgacaatgctaatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttttaccttgaagattgttgtagta |
274 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||| | |||||||||||| ||||| |||||||| |||||||||||||| |||||||||| ||| || |
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| T |
11150058 |
caaatttgttgacaatgctaatggtatctgaaccagatgttgagaacaactcttgatcactttggagcaaaccctttttcacttgaagattagagtaata |
11149959 |
T |
|
| Q |
275 |
gttcttgtctaatttatcaggagttgttgg |
304 |
Q |
| |
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||||||||| |||||||||||||| ||||| |
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| T |
11149958 |
gttcttgtcaaatttatcaggagtcgttgg |
11149929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 252
Target Start/End: Original strand, 11183613 - 11183671
Alignment:
| Q |
194 |
aatggtatctgcacccggtgttgagaacaattcttggtcactttgaagcaaaccctttt |
252 |
Q |
| |
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||||||||| ||||| ||||| || ||||||||||||||||| |||| ||| ||||||| |
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| T |
11183613 |
aatggtatcagcaccaggtgtggaaaacaattcttggtcactctgaaacaacccctttt |
11183671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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