View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11313_high_1_N (Length: 488)
Name: NF11313_high_1_N
Description: NF11313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11313_high_1_N |
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Alignment Details
Target: chr3 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 27 - 457
Target Start/End: Complemental strand, 53679693 - 53679263
Alignment:
| Q |
27 |
tcattctcaatctcccatttcatatttatttccaatctgtaatttattattaacgttttcaatctccatttattttaaattcaattatacctgcttaatc |
126 |
Q |
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| T |
53679693 |
tcattctcaatctcccatttcatatttatttccaatctgtaatttattattaacgtttttaatctaattatattttaaattcaattatacctgcttaatc |
53679594 |
T |
|
| Q |
127 |
aacattgaatcacccttcttactttcgtttgattttcttgaaaatccatccatttagatcagaaatagaacctagttgaattgattttacatgcttaatc |
226 |
Q |
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|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
53679593 |
aacaccgaatcacctttcttactttcgtttgattttcttgaaaatccatccatttagatcagaaatagaacctaattgaattgattttacatgcttaatc |
53679494 |
T |
|
| Q |
227 |
aactcccttcgtgattcttgaattgtttgattgaaagattggtaaaaagtttcaattttgttcaccacgtttaacgttttaaatacgtcatgtttcagtt |
326 |
Q |
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| T |
53679493 |
aactcccttcatgattcttgaattgtttgattgaaagattggtaaaaaatttcaattttgttcaccatgtttaacgttttaaatatgttatgtttcagtt |
53679394 |
T |
|
| Q |
327 |
ctgtttttaagctagttatattctggttcaatttcacttcttgttaaaacagttcagttagtaaccagaccttttcatatggttcagtctgaacatttat |
426 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53679393 |
ttgtttttaagctagttatattctggttcaatttcagttcttgttaaaacagttcagttagtaaccagaccttttcatatggttcagtctgaacatttat |
53679294 |
T |
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| Q |
427 |
gaaccagtttagtttaataacagtttggttc |
457 |
Q |
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| T |
53679293 |
aaaccagtttagttcaataacagtttggttc |
53679263 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 414
Target Start/End: Original strand, 2045022 - 2045066
Alignment:
| Q |
370 |
ttaaaacagttcagttagtaaccagaccttttcatatggttcagt |
414 |
Q |
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| T |
2045022 |
ttaaaacagttcagctaataaccaatccttttcatatggttcagt |
2045066 |
T |
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