View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11313_high_2 (Length: 480)
Name: NF11313_high_2
Description: NF11313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11313_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 54 - 342
Target Start/End: Complemental strand, 33757270 - 33756982
Alignment:
| Q |
54 |
ctgtgacggtaacggaaatgactgtgacggtgacggtgattgtgattgagaagaatgtttattaatcatgaagagagtgaaagcattaaaagtggttcga |
153 |
Q |
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| T |
33757270 |
ctgtgacggtaatggaaatgactgtgactgtgacggtgattgtgattgagaagaatgtttattaatcatgaagagagtgaaagcattaaaagtggttcga |
33757171 |
T |
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| Q |
154 |
attggtgtattggaaataacactgagaatttgaagagcttgattttctgccatcgttgcgaggagtcgtatcgttgaaggatcgagtggtggctgtgatt |
253 |
Q |
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| T |
33757170 |
attggtgtattggaaataacattgagaatttgaagagcttgattttctgccatcgttgcgaggagtcgtatcgttgaaggatcgagtggtggttgtgatt |
33757071 |
T |
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| Q |
254 |
gtttcacgcatatttggtttattagattttctacggatgccggaagtgtcaccggtggttgctccgtcgccataactaactttcacggc |
342 |
Q |
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| T |
33757070 |
gtttcacgcatatttggtttattagattttctacggatgccggaagtgtcaccggtggttgctccgtcgccataacaaactttcacggc |
33756982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 36
Target Start/End: Complemental strand, 25730238 - 25730209
Alignment:
| Q |
7 |
ccatttattttaaaaacaatacacaacatc |
36 |
Q |
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| T |
25730238 |
ccatttattttaaaaacaatacacaacatc |
25730209 |
T |
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