View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11313_high_3 (Length: 445)
Name: NF11313_high_3
Description: NF11313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11313_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 30 - 422
Target Start/End: Original strand, 32706698 - 32707090
Alignment:
| Q |
30 |
attagctccttcctctttattatatttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcactattactttttcctatatcagaat |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32706698 |
attagctccttcctctttattatatttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcactattactttttcctatatcagaat |
32706797 |
T |
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| Q |
130 |
gcgtcgatttcaggtaacgacgattacaaattctactttccaagacacaggtatagcagctataggcgtggagcatcaatttcacttccaaatatcccag |
229 |
Q |
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| T |
32706798 |
gcgtcgatttcagctaacgacgattacaaattctactttccaagacacaggcatagcagctataggcgtggtgcatcaatttcacttccaaatatcccag |
32706897 |
T |
|
| Q |
230 |
atatccctttaagcatggtgttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaa |
329 |
Q |
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| T |
32706898 |
atatccctttaagcatggtgttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaa |
32706997 |
T |
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| Q |
330 |
attgtgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataatgtgctttgacatctgctgctgtacaatatgatgat |
422 |
Q |
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| T |
32706998 |
attgtgccgctacggaaatattttactagcatgcgttggttatgaatatgaatataatgtgcttttacatctgctgctgcacaatataatgat |
32707090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 54 - 106
Target Start/End: Original strand, 32749254 - 32749306
Alignment:
| Q |
54 |
tttggatttctttgtttgtagagattgaaaattgttactgcgctgttttcact |
106 |
Q |
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| T |
32749254 |
tttggatttctatgtttgtagagattgaaaattggtactatgctgctttcact |
32749306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 149 - 422
Target Start/End: Original strand, 3001615 - 3001889
Alignment:
| Q |
149 |
acgattacaaattctactttccaagacacaggtatagcagctataggcgtggagcatcaatttcacttccaaatatcccagatatccctttaagcatggt |
248 |
Q |
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| T |
3001615 |
acgattacaaattctactctccaagacacaggtatagcaggtataggcgtggtgcatcaatttcacttccaaatatcccacatatccctttaagcatggt |
3001714 |
T |
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| Q |
249 |
gttgcctcattttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaaattg-tgccgctacggaaa |
347 |
Q |
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| T |
3001715 |
gttgcctcattttggaaaatgaagtgctgctttcaagatgctcaatacgtaagctactgcagttttttgtgcaatgtctaaattgttgccactacggaaa |
3001814 |
T |
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| Q |
348 |
tattttactagcatgcgttggttatgaatatgaatataatgtgctttgacatctgctgctgtacaatatgatgat |
422 |
Q |
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| T |
3001815 |
tattttactagcatgtgttggttatgaatatgaatataatgtgctttggcatctgctgctgcacaatataatgat |
3001889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 56 - 130
Target Start/End: Original strand, 3001217 - 3001291
Alignment:
| Q |
56 |
tggatttctttgtttgtagagattgaaaattgttactgcgctgttttcactattactttttcctatatcagaatg |
130 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||| ||||||| |
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| T |
3001217 |
tggatttctttgtttgtagatattgaaaattggtactgtgctgttttcactgttactttttcctataccagaatg |
3001291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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