View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11313_high_4 (Length: 429)
Name: NF11313_high_4
Description: NF11313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11313_high_4 |
 | |
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| [»] scaffold0376 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 24 - 403
Target Start/End: Complemental strand, 29729265 - 29728886
Alignment:
| Q |
24 |
tcatcatcgatgattgcaccagttttactgctgtatggtttggacgtctcagaagagtcctctctttgagggaaagagaggaggccaactttttcgctga |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29729265 |
tcattatcgatgattgcaccagttttactgctgtatggtttggacgtctcagaagagtcctctctttgagggaaagagaggaggccaactttttcgctga |
29729166 |
T |
|
| Q |
124 |
aaccatagatggctacttgagcatatgtcattttggtgactttctccaaatcattttgtgctccggtagagattgtcccaatgagaacctgctcggcagc |
223 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29729165 |
aaccatagatggctacttgagcatatgtcattttggtgactttctccaggtcattttgtgctccggtagagattgtcccaatgagaacctgctcggcagc |
29729066 |
T |
|
| Q |
224 |
ccgaccaccaagggtcatacaagtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgggcaaacccaagagctgctgtt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
29729065 |
ccgaccaccaagggtcatacaagtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgcgcaaacccaagagctgctgtt |
29728966 |
T |
|
| Q |
324 |
ccgcgaggaacaatagttactttcaataatggctcggtatgttccaagaaccaaccaacaacggcatggcctgcttcgtg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
29728965 |
ccgcgaggaacaatagttactttcaataatggctcggtatgttccaagaaccaaccaacaacagcatggcctgcttcgtg |
29728886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 24 - 400
Target Start/End: Original strand, 38513153 - 38513529
Alignment:
| Q |
24 |
tcatcatcgatgattgcaccagttttactgctgtatggtttggacgtctcagaagagtcctctctttgagggaaagagaggaggccaactttttcgctga |
123 |
Q |
| |
|
|||| ||| ||||||||||||||||| ||||||||||||| ||| |||| | ||||||||| |||||||||||||||||||||| ||||||||||||| |
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|
| T |
38513153 |
tcattatcaatgattgcaccagttttgttgctgtatggtttagacatctctaacgagtcctctttttgagggaaagagaggaggcccactttttcgctga |
38513252 |
T |
|
| Q |
124 |
aaccatagatggctacttgagcatatgtcattttggtgactttctccaaatcattttgtgctccggtagagattgtcccaatgagaacctgctcggcagc |
223 |
Q |
| |
|
||||||||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
38513253 |
aaccatagacggctacttgagcatatgtcatcttggtgactttctccaagtcatcttgtgctcctgtagagattgtcccaatgagaacctgctcggcagc |
38513352 |
T |
|
| Q |
224 |
ccgaccaccaagggtcatacaagtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgggcaaacccaagagctgctgtt |
323 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |||||||||||||||||||||||| | |||| |
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|
| T |
38513353 |
ccgaccaccaagggtcatacaagtcctatcgaaaagttgttcctttgtcatgagaaggttctcatttggaacatactgggcaaacccaagagccgatgtt |
38513452 |
T |
|
| Q |
324 |
ccgcgaggaacaatagttactttcaataatggctcggtatgttccaagaaccaaccaacaacggcatggcctgcttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
38513453 |
ccgcgaggaacaatagttactttcaacaatgggtcagtatgttccaagaaccaacctgcaacagcatgacctgcttc |
38513529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 66 - 403
Target Start/End: Complemental strand, 16838698 - 16838361
Alignment:
| Q |
66 |
gacgtctcagaagagtcctctctttgagggaaagagaggaggccaactttttcgctgaaaccatagatggctacttgagcatatgtcattttggtgactt |
165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
16838698 |
gacgtctcagaagagtcctctctttgagggaaagagaggaggccaactttttcgctgaaaccatagatggatacttgagcatatgtcattttggtgactt |
16838599 |
T |
|
| Q |
166 |
tctccaaatcattttgtgctccggtagagattgtcccaatgagaacctgctcggcagcccgaccaccaagggtcatacaagtcctatcaaaaagttgctc |
265 |
Q |
| |
|
||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16838598 |
tctccaagtcattttgtgctccggtagagactgtcccaatgagaacctgctcggcagcccgaccaccaagggtcatacaagtcctatcaaaaagttgctc |
16838499 |
T |
|
| Q |
266 |
ttttgtcatgagaaggttctcatttgaaacatactgggcaaacccaagagctgctgttccgcgaggaacaatagttactttcaataatggctcggtatgt |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16838498 |
ttttgtcatgagaaggttctcatttgaaacatactgggcaaacccaagagctgctgttccgcgaggaacaatagttactttcaataatggctcggtatgt |
16838399 |
T |
|
| Q |
366 |
tccaagaaccaaccaacaacggcatggcctgcttcgtg |
403 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
16838398 |
tccaagaaccaaccaacaacagcatggcctgcttcgtg |
16838361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 16849893 - 16849847
Alignment:
| Q |
24 |
tcatcatcgatgattgcaccagttttactgctgtatggtttggacgt |
70 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16849893 |
tcattatcgatgattgcaccagttttactgctgtatggtttggacgt |
16849847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 24 - 400
Target Start/End: Complemental strand, 45285554 - 45285180
Alignment:
| Q |
24 |
tcatcatcgatgattgcaccagttttactgctgtatggtttggacgtctcagaagagtcctctctttgagggaaagagaggaggccaactttttcgctga |
123 |
Q |
| |
|
|||| ||| |||||||||| |||||| |||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
45285554 |
tcattatcaatgattgcactagttttgctgctgtatggtttggacgtctcaaaagagtcctcacttggagggaaagagaggaggccaactttttcgctga |
45285455 |
T |
|
| Q |
124 |
aaccatagatggctacttgagcatatgtcattttggtgactttctccaaatcattttgtgctccggtagagattgtcccaatgagaacctgctcggcagc |
223 |
Q |
| |
|
||||||||| ||||||||||||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
45285454 |
aaccatagacagctacttgagcatatatcatcttggtgactttctccaagtcatcttgtgctcctgtagagattgtcccaatgagaacctgctcggcagc |
45285355 |
T |
|
| Q |
224 |
ccgaccaccaagggtcatacaagtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgggcaaacccaagagctgctgtt |
323 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| |||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
45285354 |
ccaaccaccaagggtcatacaagtcctatcaaaaagctgctc--ttgtcatgagatggttctcgtttggaacatactgcgcaaacccaagagctgctgtt |
45285257 |
T |
|
| Q |
324 |
ccgcgaggaacaatagttactttcaataatggctcggtatgttccaagaaccaaccaacaacggcatggcctgcttc |
400 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||| | |||||||||||||||||||| |||| ||||| |||||||| |
|
|
| T |
45285256 |
cctcgaggaacaatagttactttcaaaaatggattagtatgttccaagaaccaacctgcaacagcatgacctgcttc |
45285180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 228; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 33 - 400
Target Start/End: Original strand, 20477681 - 20478048
Alignment:
| Q |
33 |
atgattgcaccagttttactgctgtatggtttggacgtctcagaagagtcctctctttgagggaaagagaggaggccaactttttcgctgaaaccataga |
132 |
Q |
| |
|
||||| |||| ||||| |||||||||||||||||||||||| |||||||||| || |||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
20477681 |
atgatcgcactagtttcgctgctgtatggtttggacgtctcaaaagagtcctcaattgaagggaaagagagaaggccaactttttcgctgaaaccatata |
20477780 |
T |
|
| Q |
133 |
tggctacttgagcatatgtcattttggtgactttctccaaatcattttgtgctccggtagagattgtcccaatgagaacctgctcggcagcccgaccacc |
232 |
Q |
| |
|
|| |||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
20477781 |
cggttacttgagcatatgtcatcttggtgactttctccaagtcattttgtgctcctgtagagattctcccaattagaacctgctcggcagcccgaccacc |
20477880 |
T |
|
| Q |
233 |
aagggtcatacaagtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgggcaaacccaagagctgctgttccgcgagga |
332 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||| |||||||||||| ||| ||||||| |||| ||||||||||||||||||| |||||||| |||||| |
|
|
| T |
20477881 |
aagggtcatacaagtcctatcgaaaagctgctcctttgtcatgagatggtcgtcatttggaacaaactgggcaaacccaagagccgctgttccacgagga |
20477980 |
T |
|
| Q |
333 |
acaatagttactttcaataatggctcggtatgttccaagaaccaaccaacaacggcatggcctgcttc |
400 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||||||||||||||| |||| ||||||| ||||| |
|
|
| T |
20477981 |
acaatagttactttcaacaatggctcagtatgttccaagaaccaacccgcaacaacatggcccgcttc |
20478048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0376 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0376
Description:
Target: scaffold0376; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 33 - 400
Target Start/End: Complemental strand, 3783 - 3412
Alignment:
| Q |
33 |
atgattgcaccagttttactgctgtatggtttggacgtctcagaagagtcctctct---ttgagggaaagagaggaggccaactttttcgctgaaaccat |
129 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| | || |||||| | ||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
3783 |
atgattgcaccagtttcgctgctgtatggtttggacatctcaaacgaatcctctttatgatgagggaaagagaggaggccaacttgttcgctaaaaccat |
3684 |
T |
|
| Q |
130 |
agatggctacttgagcatatgtcattttggtgactttctccaaatcattttgtgctccggtagagattgtcccaatgagaacctgctcggcagcccgacc |
229 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| |||||||| ||||||||||||||||| |||||||| ||||| |
|
|
| T |
3683 |
agacggctacttgagcatatgtcatcttggtgactttctccaagtcatcttgtgctcctgtagagatagtcccaatgagaacctgttcggcagcgcgacc |
3584 |
T |
|
| Q |
230 |
accaagggtcatacaagtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgggcaaacccaagagctgctgttccgcga |
329 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||| || |||||||||||||| |||||||| | |||||||||||||||||||| | ||||||||||| |
|
|
| T |
3583 |
accaagggccatacaagtcctatcgaaaagttgctccttggtcatgagaaggttttcatttgacaaatactgggcaaacccaagagtttctgttccgcga |
3484 |
T |
|
| Q |
330 |
ggaacaatagttactttcaataatggctcggtatgttccaagaaccaa-ccaacaacggcatggcctgcttc |
400 |
Q |
| |
|
|||||||||||||||||||| |||||||| |||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
3483 |
ggaacaatagttactttcaacaatggctcagtatgttccaagaaccaaccccacaacaacatggcctgcttc |
3412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 209 - 400
Target Start/End: Complemental strand, 24005147 - 24004956
Alignment:
| Q |
209 |
aacctgctcggcagcccgaccaccaagggtcatacaagtcctatcaaaaagttgctcttttgtcatgagaaggttctcatttgaaacatactgggcaaac |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| |||||| |||||||||||||| ||| |||||| ||||||||| |
|
|
| T |
24005147 |
aacctgctcggcagcccgaccaccaagggtcatacaagtcatatccaaaagctgctcctttgtcctgagaaggttctcacttggaacatattgggcaaac |
24005048 |
T |
|
| Q |
309 |
ccaagagctgctgttccgcgaggaacaatagttactttcaataatggctcggtatgttccaagaaccaaccaacaacggcatggcctgcttc |
400 |
Q |
| |
|
||||| |||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
24005047 |
ccaagtgctgctgtgccgcgaggaacaatggttactttcaacaatggctcacaatgttccaagaaccaacctgcaacagcatggcctgcttc |
24004956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 88 - 215
Target Start/End: Complemental strand, 24005535 - 24005408
Alignment:
| Q |
88 |
tttgagggaaagagaggaggccaactttttcgctgaaaccatagatggctacttgagcatatgtcattttggtgactttctccaaatcattttgtgctcc |
187 |
Q |
| |
|
||||||||||||||||||| || |||||||| ||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
24005535 |
tttgagggaaagagaggagacccactttttcactgaaaccatagatggctacttgggcatatgtcatcttggttactttctccaagtcattttgtgctcc |
24005436 |
T |
|
| Q |
188 |
ggtagagattgtcccaatgagaacctgc |
215 |
Q |
| |
|
|| ||||||| ||||||||||||||| |
|
|
| T |
24005435 |
agtggagattgctccaatgagaacctgc |
24005408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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