View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11313_high_6 (Length: 381)
Name: NF11313_high_6
Description: NF11313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11313_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 80 - 352
Target Start/End: Original strand, 28783194 - 28783466
Alignment:
| Q |
80 |
gaacctgtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaaccggtggtggttgtgg |
179 |
Q |
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| T |
28783194 |
gaaccggtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaaccggtggtggttgtgg |
28783293 |
T |
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| Q |
180 |
ctttggaactggaggaggtttgtatactggagcaggtggtagaacaggatgttcaacctttggtggtggacatggtttcttgactggaacaggaggagga |
279 |
Q |
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| T |
28783294 |
ctttggaactggaggaggtttgtatactggagcaggtggtagaactggatgttcaacctttggtggtggacatggtttcttgactggaacaggaggagga |
28783393 |
T |
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| Q |
280 |
agaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtt |
352 |
Q |
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| T |
28783394 |
agaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtt |
28783466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 87 - 269
Target Start/End: Original strand, 28783099 - 28783278
Alignment:
| Q |
87 |
tggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaaccggtggtggttgtggctttgga |
186 |
Q |
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| T |
28783099 |
tggaggcttatatattggaacaggtggtagaactgggtgctcaatctttggt---ggacatggtttcttgatcgggactggtggtggaagtgcctttgga |
28783195 |
T |
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| Q |
187 |
actggaggaggtttgtatactggagcaggtggtagaacaggatgttcaacctttggtggtggacatggtttcttgactggaac |
269 |
Q |
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| T |
28783196 |
accggtggaggtttgtatactggaacaggtggtaaaactggatgttcaacctttggtggtggacatggtttcttgaccggaac |
28783278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 352
Target Start/End: Original strand, 28783448 - 28783532
Alignment:
| Q |
268 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtt |
352 |
Q |
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| T |
28783448 |
acaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggtttatggtaaacaggcacaggcggaggaagaggtt |
28783532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 274 - 345
Target Start/End: Original strand, 28783553 - 28783624
Alignment:
| Q |
274 |
ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggagga |
345 |
Q |
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| T |
28783553 |
ggaggaagaggtttctcataaacaggtgtaggaggagggataggtttttcatagataggcacaggtggagga |
28783624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 274 - 352
Target Start/End: Original strand, 28783421 - 28783499
Alignment:
| Q |
274 |
ggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacaggcacaggtggaggaagaggtt |
352 |
Q |
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| T |
28783421 |
ggagggagaggtttatgataaacaggcacaggtggaggaagaggtttctcatacacaggtgtaggtggagggagaggtt |
28783499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 332
Target Start/End: Original strand, 28783514 - 28783578
Alignment:
| Q |
268 |
acaggaggaggaagaggtttatgatatacaggcgtaggtggagggagaggtttatgataaacagg |
332 |
Q |
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| T |
28783514 |
acaggcggaggaagaggtttctcgtagacaggtgtaggtggaggaagaggtttctcataaacagg |
28783578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 3855632 - 3855662
Alignment:
| Q |
1 |
gataggaggctgtctgtcaaagataaaggac |
31 |
Q |
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| T |
3855632 |
gataggaggctgtctgtcaaagataaaggac |
3855662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 66
Target Start/End: Complemental strand, 25730238 - 25730209
Alignment:
| Q |
37 |
ccatttattttaaaaacaatacacaacatc |
66 |
Q |
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| T |
25730238 |
ccatttattttaaaaacaatacacaacatc |
25730209 |
T |
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