View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11313_low_1 (Length: 360)
Name: NF11313_low_1
Description: NF11313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11313_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 7 - 344
Target Start/End: Original strand, 34426317 - 34426654
Alignment:
| Q |
7 |
aaatagaacatatgtattttaagcatgttgacggatctttctgggaagaaacatcaccnnnnnnnngggatctgttacccaataaacgacagaaagtgag |
106 |
Q |
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| T |
34426317 |
aaatagaacatatgtattttaagtatgttgacggatctttctgagaagaaacatcaccaaaaaaaagggatctgttacccaataaacgacagaaagtgag |
34426416 |
T |
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| Q |
107 |
ttaagcaactccataacaagtgagcgcattcattaaaataagacatggattggcagacactaaaagaatcaaatatatcccacaaacaataaacagacaa |
206 |
Q |
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| T |
34426417 |
ttaagcaactccataacaagtgagcgcattcattaaaataagacatggattggcagacactaaaagaatcaaatatatcccacaaacaataaacagacaa |
34426516 |
T |
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| Q |
207 |
aatttcatccacctcactgtttatagaagactgcataacaatgaaacaaaatagtacctcaaattcaaagcaacnnnnnnnnnnnnnnnngacagtctca |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
34426517 |
aatttcatccacctcactgtttatagaagactgcataacaatgaaacaaaataggacctcaaattcaaagcaacaaaaaaaaaccaaaaagacagtctca |
34426616 |
T |
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| Q |
307 |
gttcccaaataattgagatgatacaaagtggtattgat |
344 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |
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| T |
34426617 |
gttcccaaattattgagatgatacaaagtggtattgat |
34426654 |
T |
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