View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11313_low_4 (Length: 211)
Name: NF11313_low_4
Description: NF11313
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11313_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 196
Target Start/End: Original strand, 10231380 - 10231565
Alignment:
| Q |
13 |
gagatgaagatcgtaagagttgcagtgaaagaatgaggaaattgtgatttaggttaggagggaggta-gatacttatcgtgtactacttgcatgagaaaa |
111 |
Q |
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| T |
10231380 |
gagaagaagatcgtaagagttgtagtgaaagagtgaggaaattgtgatttaggttaggagggaggtatgatacttattgtgtactgcttgcatgagaaaa |
10231479 |
T |
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| Q |
112 |
-aatcaaatatgtacgattgttgatggttggtggtatttcttttacttgaattattactcatttccaacacaccacgtttattact |
196 |
Q |
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| T |
10231480 |
aaatcaaatatctactattggtgatggttggtggtatttcttttacttgaattattactcatttccaacacaccacgtttattact |
10231565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 10240169 - 10240301
Alignment:
| Q |
20 |
agatcgtaagagttgcagtgaaagaatgaggaaattgtgatttaggttaggagggaggta-gatacttatcgtgtactacttgcatgag-----aaaaaa |
113 |
Q |
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| T |
10240169 |
agatagtaagagttgcagtgaaagagtgaggaaattgtgatttaggtaaggagggaggtatgatacttatcgtgtac--gttgcatgagaaaaaaaaaaa |
10240266 |
T |
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| Q |
114 |
tcaaatatgtacgattgttgatggttggtggtatt |
148 |
Q |
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| T |
10240267 |
tcaaatacgtactattattgatggttggtggtatt |
10240301 |
T |
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