View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11314_low_2 (Length: 356)
Name: NF11314_low_2
Description: NF11314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11314_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 138; Significance: 4e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 17 - 215
Target Start/End: Complemental strand, 16598095 - 16597902
Alignment:
| Q |
17 |
ctcacaatagatgtgataaaattgaaacataaatttataagtggagcagttatcattttacaagtcagttttataaaatgtttggttaggaccaacacaa |
116 |
Q |
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| T |
16598095 |
ctcacagtagatgtgataaaattgaaacataaatttataagtgaagcagttatcattttacaagttagttttgtaaaatgtttggttaggaccaacacaa |
16597996 |
T |
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| Q |
117 |
attttaagatcatgttcaaatgtgaaaaatattgaccaaattaaaggttnnnnnnngtaaaaggaagatgtgaaagataaagagtaaaggaggaggaat |
215 |
Q |
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| T |
16597995 |
attttaagatcatgttcaaatgtgaaaaatattgacc-----aaaggttaaaaaaagtaaaaggaagatgtgaaagataaagagtaaatgaggaggaat |
16597902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 213 - 356
Target Start/End: Original strand, 16597737 - 16597882
Alignment:
| Q |
213 |
aattatagtttatttaagagcatttgaattaaatttcacgtgtttaatttagtttaactagttaaaaatatgatttctcctagt--tataccccttaaat |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
16597737 |
aattatagtttatttaagagcatttgaattaaatttcacgtgtttaatttagtttaactagttaaaaatatgatttctcctagttatataccccttaaat |
16597836 |
T |
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| Q |
311 |
ttttattacgcccatgttggttttgataccatcttcaaaacctacc |
356 |
Q |
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| T |
16597837 |
ttttattacgcccatgttggttttgataccatcttcaaaacctacc |
16597882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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