View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11314_low_5 (Length: 280)
Name: NF11314_low_5
Description: NF11314
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11314_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 4 - 242
Target Start/End: Complemental strand, 2894202 - 2893964
Alignment:
| Q |
4 |
ccaaacacgacataaacactgattcaataatctcaatagcatagcttatcgaaagaataaattaaa-ttactacttatgattcatacacagccactatta |
102 |
Q |
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| T |
2894202 |
ccaaacacgacataaacactgattcaataatctcaatagcatagcttgtagaaagaaaaaattaaaattactacttatgattcatacacggccactatta |
2894103 |
T |
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| Q |
103 |
taagcgaaaatggnnnnnnnngcttataatagtggtcatagggtgtatgaatcaccgtcacagacaccgacaccagattcaacaatctcaatagcataac |
202 |
Q |
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| T |
2894102 |
taagcgaaaatggttttttt-gcttataatagtggtcatagggtgtatgaatcaccgtcacagacaccgacaccagattcaacaatctcaatagcataac |
2894004 |
T |
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| Q |
203 |
ttaaagaaaactaatattactgctcatgattcacaaacac |
242 |
Q |
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|||||||||||||||||||||||| || ||||||| |||| |
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| T |
2894003 |
ttaaagaaaactaatattactgcttataattcacagacac |
2893964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 178 - 264
Target Start/End: Complemental strand, 2893938 - 2893851
Alignment:
| Q |
178 |
gattcaacaatctcaatagcataacttaaag-aaaactaatattactgctcatgattcacaaacacgggtaccgaacacgtcatcact |
264 |
Q |
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|||||||||||||||||||||||| ||| || |||||||| |||||| || |||||||||||||||||| ||||||||||||| |||| |
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| T |
2893938 |
gattcaacaatctcaatagcataagttatagcaaaactaaaattactacttatgattcacaaacacgggcaccgaacacgtcagcact |
2893851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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