View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11315_high_9 (Length: 242)
Name: NF11315_high_9
Description: NF11315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11315_high_9 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 45528777 - 45529007
Alignment:
| Q |
1 |
aacacgaattcaattagctttgaaggaattaatttgaaggaaataacagttccattagagaagcttttccattgacgaattgatttgagaagaagaacag |
100 |
Q |
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| T |
45528777 |
aacacgaattcaattagctttgaaggaattaat-----------aacagttccattagagaagcttttccattgacgaattgatttgagaagaagaacag |
45528865 |
T |
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| Q |
101 |
tggtggataaattgaggagagaaaacaaatttaaaggaatccattccctgcaagaaactcatcactttgttttttattgttttccaaccacaaattgaag |
200 |
Q |
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| T |
45528866 |
tggtggataaattgaggagagaaaacaaatttaaaggaatcgattccctgcaagaaactcatcactttgttttttattgttttccaaccacaaattgaag |
45528965 |
T |
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| Q |
201 |
gtgaattaagtannnnnnnaagatctgtttgtttttcatctc |
242 |
Q |
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| T |
45528966 |
gtgaattaagtatttttttaagatctgtttgtttttcatctc |
45529007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 13390344 - 13390401
Alignment:
| Q |
84 |
tttgagaagaagaacagtggtggataaattgaggagagaaaacaaatttaaaggaatc |
141 |
Q |
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| T |
13390344 |
tttgagaagaagaaccgtgatcgataaattgaggagagaaaacatatttaaaggaatc |
13390401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 13398450 - 13398503
Alignment:
| Q |
88 |
agaagaagaacagtggtggataaattgaggagagaaaacaaatttaaaggaatc |
141 |
Q |
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| T |
13398450 |
agaagaacaaccgtgatcgataaattgaggagagaaaacatatttaaaggaatc |
13398503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 13393091 - 13393126
Alignment:
| Q |
159 |
tcatcactttgttttttattgttttccaaccacaaa |
194 |
Q |
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| T |
13393091 |
tcatcactttgttttttatttttttccaaccacaaa |
13393126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 194
Target Start/End: Original strand, 13396230 - 13396265
Alignment:
| Q |
159 |
tcatcactttgttttttattgttttccaaccacaaa |
194 |
Q |
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| T |
13396230 |
tcatcactttgttttttatttttttccaaccacaaa |
13396265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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