View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11315_low_1 (Length: 865)
Name: NF11315_low_1
Description: NF11315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11315_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 4e-93; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 138 - 342
Target Start/End: Complemental strand, 24538634 - 24538429
Alignment:
| Q |
138 |
atggttatggattttgattctctcaagttggaaaaataaaa-cttgaggaaataatgtgaaaatttagagcattgaaatataaagggaggatatctttga |
236 |
Q |
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| T |
24538634 |
atggttatggattttgattctctcaagttggaaaaaaaaaaacttgtggaaataatgtgaaaatttagagcattgaaatataaagggaggatatctttga |
24538535 |
T |
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| Q |
237 |
aatttgaaagaaaaagccatccaagaacctaaacaataacaatttttcgcataattaatattaaatccaacatgatgattcatgtccagaactagaatca |
336 |
Q |
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|||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
24538534 |
aatttgaaagaaaaagccatccaaaaacctaaacaataaaaatttctcgcataattaatattaaatccaacatgatgattcatgtccagaactagaatga |
24538435 |
T |
|
| Q |
337 |
ctacaa |
342 |
Q |
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|||||| |
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| T |
24538434 |
ctacaa |
24538429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 718 - 848
Target Start/End: Complemental strand, 24537349 - 24537214
Alignment:
| Q |
718 |
gaagtagatttaaagcgacaagagttgcggaagtcaaaccaagctggaatagaagagcagattcgttcggtagaggtaaaaagagagaagcttcag---- |
813 |
Q |
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| T |
24537349 |
gaagtagatttaaagcgacaagagttgcggaagtcaaaccaagctggaaaagaagagcagattcatttggtagaagtaaaaagagagaagcttcagacag |
24537250 |
T |
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| Q |
814 |
-agacaagcaacgggacgagaacgtgccgccagagt |
848 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
24537249 |
aagacaaacaacgggacgagaacgtgccgccagagt |
24537214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 9 - 109
Target Start/End: Complemental strand, 24538774 - 24538676
Alignment:
| Q |
9 |
gagatgaagagaccgtaatgacacaatgagaatatgagagagttgttccaaaatggttaacaaatatcattactcttatttaaaaccttaactttttaaa |
108 |
Q |
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| T |
24538774 |
gagatgaagagaccgtaaagacacaatgagaatatgagag--ttgtcccaaaatggttaacaaatatcattactcttatttaaaaccttaactttttaaa |
24538677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 428 - 484
Target Start/End: Original strand, 29704347 - 29704403
Alignment:
| Q |
428 |
catccacaacttttccaaacccaaaagatatgaaatataagcaacagataaattgtg |
484 |
Q |
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||||||||||| ||| ||| |||||||||||||||||||| | ||||||||||||| |
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| T |
29704347 |
catccacaactcttcaaaaaccaaaagatatgaaatataaacctcagataaattgtg |
29704403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 293 - 334
Target Start/End: Original strand, 29704243 - 29704284
Alignment:
| Q |
293 |
aatattaaatccaacatgatgattcatgtccagaactagaat |
334 |
Q |
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| T |
29704243 |
aatattaaatcaaacattatgattcatgtccagaactggaat |
29704284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 718 - 805
Target Start/End: Original strand, 24318109 - 24318196
Alignment:
| Q |
718 |
gaagtagatttaaagcgacaagagttgcggaagtcaaaccaagctggaatagaagagcagattcgttcggtagaggtaaaaagagaga |
805 |
Q |
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||||||||| ||||||||||||||||| ||| ||||| |||||||||| || ||||| |||| |||||| || ||| ||||||||| |
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| T |
24318109 |
gaagtagatctaaagcgacaagagttgttgaaatcaaaacaagctggaaaggacgagcaaattcattcggtggaagtagaaagagaga |
24318196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 182 - 245
Target Start/End: Complemental strand, 29103810 - 29103747
Alignment:
| Q |
182 |
gaggaaataatgtgaaaatttagagcattgaaatataaagggaggatatctttgaaatttgaaa |
245 |
Q |
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||||||||||||||| ||| |||| |||| |||||||||| ||||||| | ||||||||||||| |
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| T |
29103810 |
gaggaaataatgtgacaatctagaccattaaaatataaagagaggataacattgaaatttgaaa |
29103747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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