View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11315_low_12 (Length: 236)

Name: NF11315_low_12
Description: NF11315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11315_low_12
NF11315_low_12
[»] chr1 (4 HSPs)
chr1 (1-222)||(45528404-45528624)
chr1 (122-222)||(45529228-45529328)
chr1 (167-204)||(5226702-5226739)
chr1 (148-210)||(48578435-48578497)
[»] chr7 (2 HSPs)
chr7 (109-220)||(23956509-23956620)
chr7 (148-222)||(11698127-11698201)
[»] chr8 (1 HSPs)
chr8 (109-222)||(29702546-29702659)
[»] chr4 (3 HSPs)
chr4 (139-196)||(2904476-2904534)
chr4 (148-210)||(1995474-1995536)
chr4 (148-222)||(35318333-35318407)
[»] chr5 (1 HSPs)
chr5 (148-209)||(8223407-8223468)
[»] chr3 (1 HSPs)
chr3 (148-209)||(37538970-37539030)
[»] scaffold0059 (1 HSPs)
scaffold0059 (148-204)||(8961-9017)
[»] scaffold0013 (1 HSPs)
scaffold0013 (148-204)||(236381-236437)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 45528624 - 45528404
Alignment:
Q  1 tagtgtaaagagaacaacgacggtgagagagaaaggaactctgatggtgggagaaatgttgattgagtgtggagagatgtggctgagaaagagatgacga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45528624 tagtgtaaagagaacaacgacggtgagagagaaaggaactctgatggtgggagaaatgttgattgagtgtggagagatgtggctgagaaagagatgacga 45528525  T
Q  101 acgtgaaggaatgaaaatggcacatgacaatggtacattaagtgaggtttaatctcaaccattcaattttaatctaatgactcatattcattctcaccat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45528524 acgtgaaggaatgaaaatggcacatgacaatggtacattaagtgaggtttaatctcaaccattcaattttaatctaatgactcatattcattctcaccat 45528425  T
Q  201 tctcgtataacaaagtcattct 222  Q
    |||| |||||| ||||||||||    
T  45528424 tctcatataac-aagtcattct 45528404  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 122 - 222
Target Start/End: Original strand, 45529228 - 45529328
Alignment:
Q  122 acatgacaatggtacattaagtgaggtttaatctcaaccattcaattttaatctaatgactcatattcattctcaccattctcgtataacaaagtcattc 221  Q
    |||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||||  |||||||| | |||||    
T  45529228 acatgataatggtacattaagtgaggtttaatctcaaccattcctttttaatctaatgactcatattcattctcatcattcttatataacaatgacattc 45529327  T
Q  222 t 222  Q
    |    
T  45529328 t 45529328  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 5226702 - 5226739
Alignment:
Q  167 ttttaatctaatgactcatattcattctcaccattctc 204  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5226702 ttttaatctaatgactcatattcattctcaccattctc 5226739  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 148 - 210
Target Start/End: Complemental strand, 48578497 - 48578435
Alignment:
Q  148 tttaatctcaaccattcaattttaatctaatgactcatattcattctcaccattctcgtataa 210  Q
    |||||||||||||||||| |||||||||||||| | | ||  ||||||||||||||| |||||    
T  48578497 tttaatctcaaccattcatttttaatctaatgattaacatgtattctcaccattctcatataa 48578435  T

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Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 109 - 220
Target Start/End: Original strand, 23956509 - 23956620
Alignment:
Q  109 gaatgaaaatggcacatgacaatggtacattaagtgaggtttaatctcaaccattcaattttaatctaatgactcatattcattctcaccattctcgtat 208  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||| |||||  |||||||||||||| ||||||||||||||| ||||||| |||    
T  23956509 gaatgaaagtggcacatgataatggtacattaagtgaggtttaatctcaatcattcctttttaatctaatgattcatattcattctcatcattctcatat 23956608  T
Q  209 aacaaagtcatt 220  Q
    ||||||||||||    
T  23956609 aacaaagtcatt 23956620  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 11698127 - 11698201
Alignment:
Q  148 tttaatctcaaccattcaattttaatctaatgactcatattcattctcaccattctcgtataacaaagtcattct 222  Q
    |||||||||||||||| | |||| ||||||||| | ||  ||||||||| ||||||| ||||| | |||||||||    
T  11698127 tttaatctcaaccatttatttttgatctaatgattgatgatcattctcaacattctcatataaaatagtcattct 11698201  T

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Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 109 - 222
Target Start/End: Complemental strand, 29702659 - 29702546
Alignment:
Q  109 gaatgaaaatggcacatgacaatggtacattaagtgaggtttaatctcaaccattcaattttaatctaatgactcatattcattctcaccattctcgtat 208  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| | |||||||||||||  ||||||||||||||| |||| || |||    
T  29702659 gaatgaaaatggcacatgataatggtacattaagtgaggtttaatctcaatcattaatttttaatctaatggatcatattcattctcatcattttcatat 29702560  T
Q  209 aacaaagtcattct 222  Q
    ||||||||||||||    
T  29702559 aacaaagtcattct 29702546  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Complemental strand, 2904534 - 2904476
Alignment:
Q  139 taagtgaggttt-aatctcaaccattcaattttaatctaatgactcatattcattctca 196  Q
    |||||||||||| ||||||||||||||  ||||||||||||||||||||||||||||||    
T  2904534 taagtgaggttttaatctcaaccattcttttttaatctaatgactcatattcattctca 2904476  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 210
Target Start/End: Original strand, 1995474 - 1995536
Alignment:
Q  148 tttaatctcaaccattcaattttaatctaatgactcatattcattctcaccattctcgtataa 210  Q
    |||||||||||||||||  ||||||| | ||| ||| |||||||||||| ||||||| |||||    
T  1995474 tttaatctcaaccattcctttttaatttgatggctcttattcattctcatcattctcatataa 1995536  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 222
Target Start/End: Original strand, 35318333 - 35318407
Alignment:
Q  148 tttaatctcaaccattcaattttaatctaatgactcatattcattctcaccattctcgtataacaaagtcattct 222  Q
    |||||||||||||||| | |||||||||||||  | ||  ||||||||||||||||  ||||| | |||||||||    
T  35318333 tttaatctcaaccatttatttttaatctaatggttgatgatcattctcaccattcttatataagatagtcattct 35318407  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 209
Target Start/End: Complemental strand, 8223468 - 8223407
Alignment:
Q  148 tttaatctcaaccattcaattttaatctaatgactcatattcattctcaccattctcgtata 209  Q
    |||||||||| ||||  ||||||||||||| |||| |||  |||||||||||||||| ||||    
T  8223468 tttaatctcagccatataattttaatctaaagactaataagcattctcaccattctcatata 8223407  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 148 - 209
Target Start/End: Original strand, 37538970 - 37539030
Alignment:
Q  148 tttaatctcaaccattcaattttaatctaatgactcatattcattctcaccattctcgtata 209  Q
    |||||||||||||||||  |||||||||||||  ||||| ||||||||| ||||||| ||||    
T  37538970 tttaatctcaaccattct-ttttaatctaatggttcataatcattctcatcattctcatata 37539030  T

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Target: scaffold0059 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Complemental strand, 9017 - 8961
Alignment:
Q  148 tttaatctcaaccattcaattttaatctaatgactcatattcattctcaccattctc 204  Q
    |||||| ||||||| ||||||||||||||| | |||  ||| |||||||||||||||    
T  9017 tttaatttcaaccaatcaattttaatctaacggctccaatttattctcaccattctc 8961  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 204
Target Start/End: Original strand, 236381 - 236437
Alignment:
Q  148 tttaatctcaaccattcaattttaatctaatgactcatattcattctcaccattctc 204  Q
    |||||| ||||||| ||||||||||||||| | |||  ||| |||||||||||||||    
T  236381 tttaatttcaaccaatcaattttaatctaacggctccaatttattctcaccattctc 236437  T

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