View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11315_low_2 (Length: 599)
Name: NF11315_low_2
Description: NF11315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11315_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 1 - 582
Target Start/End: Original strand, 41296868 - 41297462
Alignment:
| Q |
1 |
ttattatttcctttgtgttcttgcaggcaatgctgcctcagtctcactttatgctgcgccaatgtgagtaacatatcataatcaattcat---------- |
90 |
Q |
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| T |
41296868 |
ttattatttcctttgtgttcttacaggcaatgctgcctcagtctcactttatgctgcgccaatgtgagtaacatatcataatcaattcattagtaccact |
41296967 |
T |
|
| Q |
91 |
---tatctaccaaaatgaagtgttgaatccttaattttgatgcttaattttcagggttacatttaaaagagtaataaggaagaaaagcacagaggaattt |
187 |
Q |
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| T |
41296968 |
cattatctaccaaaatgaagtgttgaatccttaattttgatgcttaattttcagggttacatttaaaagagtaataaggaagaaaagcacagaggaattt |
41297067 |
T |
|
| Q |
188 |
tcatgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtaa |
287 |
Q |
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| T |
41297068 |
tcatgcattccttacataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtca |
41297167 |
T |
|
| Q |
288 |
ccgttaatggagttggaattgctcttgagttatcctatgttctcatttatttctggtattcttcgcccaaaggaaaggtaattagttaacttacatgcca |
387 |
Q |
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| T |
41297168 |
cagttaatggagttggaattgctcttgagttatcttatgttctcatttatttctggtattcttcgcccaaaggaaaggtaattagttaacttacatgcca |
41297267 |
T |
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| Q |
388 |
gcttttcattagtttaaaatcttttgcaaccaaaacaaattaagtgtatgtttggtatcacgttggtatgttaaaatcgggacaacccatcatgattttc |
487 |
Q |
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| T |
41297268 |
gcttttcattagtttaaaatcttttgcaaccaaaacaaattaagtgtatgtttggtatcacgttggtatgttaaaatcgggacaacccatcatgattttc |
41297367 |
T |
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| Q |
488 |
caaaccacactctataacttttgacaaatcacgataggtcgtcgtgattctggcacaactacataataccaaacatatgttaagcaccatcatct |
582 |
Q |
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| T |
41297368 |
caaaccacactctataacttttgacaaatcacgataggtcgtcgtgattctggcacaactacataataccaaacatatgttaagcaccatcatct |
41297462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 15 - 376
Target Start/End: Original strand, 41306748 - 41307118
Alignment:
| Q |
15 |
gtgttcttgcaggcaatgctgcctcagtctcactttatgctgcgccaatgtgagtaacatatcataatcaattcattatctacca--------------a |
100 |
Q |
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| T |
41306748 |
gtgttcttgcaggcaatgctgcttcagtctcactttatgcggcgccaatgtaagttacataacataattaattcatcatctaccactcttaattggagaa |
41306847 |
T |
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| Q |
101 |
aatgaagtgttgaatccttaattttgatgcttaattttcagggttacatttaaaagagtaataaggaagaaaagcacagaggaattttcatgcattcctt |
200 |
Q |
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| T |
41306848 |
aatgaagtattgaagtctt-----tcatggttaattttcagggttacatttaaaagagtaataaggaagaaaagcaccgaggaattttcatgcattcctt |
41306942 |
T |
|
| Q |
201 |
acataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtaaccgttaatggagt |
300 |
Q |
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| T |
41306943 |
acataattggattgttgaattgtcttcttttcacatggtatgggttacctattgtaagctacaaatgggaaaattttcctcttgtaaccgttaatggagt |
41307042 |
T |
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| Q |
301 |
tggaattgctcttgagttatcctatgttctcatttatttctggtattcttcgcccaaaggaaaggtaattagttaa |
376 |
Q |
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| T |
41307043 |
tggaattgctcttgagttatcctatgttcttatatacttctggtattcttcgcctaaaggaaaggtaattaattaa |
41307118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 143 - 368
Target Start/End: Complemental strand, 9612269 - 9612044
Alignment:
| Q |
143 |
gttacatttaaaagagtaataaggaagaaaagcacagaggaattttcatgcattccttacataattggattgttgaattgtcttcttttcacatggtatg |
242 |
Q |
| |
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||||| || ||||| || |||||||| |||||||| |||||||||||||| |||||||||| || ||| | ||||| ||||| |||||||| ||||||| |
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| T |
9612269 |
gttactttcaaaagggtgataaggaaaaaaagcactgaggaattttcatgtattccttacactataggactattgaactgtctccttttcacttggtatg |
9612170 |
T |
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| Q |
243 |
ggttacctattgtaagctacaaatgggaaaattttcctcttgtaaccgttaatggagttggaattgctcttgagttatcctatgttctcatttatttctg |
342 |
Q |
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| || ||||||||||| |||| |||||||||||||||||||| || ||||||||||||||||||| | | ||| || | ||||||||||||||||| || |
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| T |
9612169 |
gattgcctattgtaagtaacaagtgggaaaattttcctcttgtcactgttaatggagttggaattgttttggagctagcttatgttctcatttatttttg |
9612070 |
T |
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| Q |
343 |
gtattcttcgcccaaaggaaaggtaa |
368 |
Q |
| |
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||||||||| ||||||||||||||| |
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| T |
9612069 |
gtattcttcatccaaaggaaaggtaa |
9612044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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