View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11315_low_3 (Length: 545)
Name: NF11315_low_3
Description: NF11315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11315_low_3 |
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| [»] scaffold0059 (1 HSPs) |
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| [»] scaffold0554 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 1 - 528
Target Start/End: Complemental strand, 12610950 - 12610417
Alignment:
| Q |
1 |
agagaagagtttgggtctattagagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagctaaatggcttcaacgtgtttccg |
100 |
Q |
| |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
12610950 |
agagaagagtttggatctattggagatggagaatcaattgcaggaggttttgacatagctgaattatttccttcagcgaaatggcttcaacgtgtttccg |
12610851 |
T |
|
| Q |
101 |
gtttgaggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaatgaaag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12610850 |
gtttgaggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaatgaaag |
12610751 |
T |
|
| Q |
201 |
tcaaggtggagaagaagaagatctcgtagacattcttctaaaattccaaggtggtaatgagagcaaccaagatatatgtttaactgataacaatatcaag |
300 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
12610750 |
tcaaggtggagaagaagaagatctggtagacgttcttctaaaattccaaggtggtaatgacagcaaccaagatatatgtttaactgataacaatatcaag |
12610651 |
T |
|
| Q |
301 |
tctataatcctggtaaggataataaaccccttggtgcagagcttagattgaattgaatggttaatactttagaacaataccactatttgccatgttaaaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
12610650 |
tctataatcctggtaaggataataaaccccttggtgtagagcttagattgaattgaatggttgatactttagaacaataccactatttgccatgttaaaa |
12610551 |
T |
|
| Q |
401 |
caacata----tatannnnnnnnaaaagttagcaatgtgtcgcgaattcaagg-tttttgatgtcttgatgacagcgatagaatcagaatacatgtttgc |
495 |
Q |
| |
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||||||| | | ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12610550 |
caacatattatttttttttttttaaagtttagcaatgtgtcgcgaattcaaggttttttgatgtcttgatgacagcgatagaatcagaatacatgtttgc |
12610451 |
T |
|
| Q |
496 |
aa-ttttttgcattatcaaggattgtgatgcaac |
528 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |
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| T |
12610450 |
aatttttttgcattatcaaggattgtgatgcaac |
12610417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 28 - 333
Target Start/End: Original strand, 15885125 - 15885430
Alignment:
| Q |
28 |
ggagaatcaattgcaggaggttttgacatagctgaattatttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgc |
127 |
Q |
| |
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|||||||||||||| |||||||||||||||| |||| | ||||||||| |||||||| |||||| |||||||||||||||||||||||| |||||||||| |
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| T |
15885125 |
ggagaatcaattgctggaggttttgacataggtgaactgtttccttcatctaaatggattcaacttgtttccggtttgaggcctaaacttgagaggttgc |
15885224 |
T |
|
| Q |
128 |
ataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaatgaaagtcaaggtggagaagaagaagatctcgt |
227 |
Q |
| |
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|||| | ||||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||| ||| | |||| | || |||||||||| | || |
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| T |
15885225 |
atagacgtattgatcgaatactagaaaacatcatcattgaacataaagaagcaaattcaaaagcaaaagaatgccaagaagaagcagaagaagatttggt |
15885324 |
T |
|
| Q |
228 |
agacattcttctaaaattccaaggtggtaatgagagcaaccaagatatatgtttaactgataacaatatcaagtctataatcctggtaaggataataaac |
327 |
Q |
| |
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||| |||||||||||| |||| || | ||||| | | |||||||||| |||||||| ||||| |||||| || || |||| ||||||||||||||| |
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| T |
15885325 |
tgacgttcttctaaaataccaacgtcgcaatgataatgaaaaagatatatgcttaactgacaacaacatcaaggctgtactcctagtaaggataataaac |
15885424 |
T |
|
| Q |
328 |
cccttg |
333 |
Q |
| |
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|||||| |
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| T |
15885425 |
cccttg |
15885430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 26 - 325
Target Start/End: Complemental strand, 12637925 - 12637632
Alignment:
| Q |
26 |
atggagaatcaattgcaggaggttttgacatagctgaattatttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggtt |
125 |
Q |
| |
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||||||||||| ||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||| ||||| ||| ||||| | ||| || |
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| T |
12637925 |
atggagaatcagttggaggaggttttgacataggtgaattgtttccttcagctaaatggcttcaactagtttctggtttcaggtctaaaattgaggtatt |
12637826 |
T |
|
| Q |
126 |
gcataggcaaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaatgaaagtcaaggtggagaagaagaagatctc |
225 |
Q |
| |
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|||||| |||||||||| ||| ||| |||||| ||| ||||||||||||||| |||||||||||||| | |||| | || ||| |||||||| |
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| T |
12637825 |
gcatagacaaattgatcttatattagtaaacatcatcaatgaacataaagaagctaagtcaaaagcaaaag------aaggcgaagtagaggaagatctg |
12637732 |
T |
|
| Q |
226 |
gtagacattcttctaaaattccaaggtggtaatgagagcaaccaagatatatgtttaactgataacaatatcaagtctataatcctggtaaggataataa |
325 |
Q |
| |
|
||||| |||||| |||||| |||||||||||||| | ||||||||||||| |||||||| |||||||||||| |||||||||||||||| ||||||| |
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| T |
12637731 |
gtagatgttcttcaaaaatttcaaggtggtaatgatattgaccaagatatatgcttaactgacaacaatatcaaggctataatcctggtaagtataataa |
12637632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 33 - 325
Target Start/End: Complemental strand, 63051 - 62762
Alignment:
| Q |
33 |
atcaattgcaggaggttttgacatagctgaattatttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcatagg |
132 |
Q |
| |
|
|||||||| |||||||||||| ||| |||||||||||||||||| ||||||||||||| | | | | ||||||||||| ||||||||||||| |
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| T |
63051 |
atcaattggaggaggttttgaaataattgaattatttccttcagccaaatggcttcaacttatatttaatcaaaggcctaaacttaagaggttgcataga |
62952 |
T |
|
| Q |
133 |
caaattgatcaaatactagaaaacattgtcactgaacataaagaagcaaagtcaaaagcaaatgaaagtcaaggtggagaagaagaagatctcgtagaca |
232 |
Q |
| |
|
||| ||||||| ||||| |||||||| |||| | |||||||||||||||||| ||||| ||| ||| | ||| | |||| ||||||||| |||||| |
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| T |
62951 |
caacttgatcagatacttgaaaacatcgtcattcaacataaagaagcaaagttaaaagaaaaagaaggacaaact---gaagcagaagatctggtagacg |
62855 |
T |
|
| Q |
233 |
ttcttctaaaattccaaggtggtaatgagagcaaccaagatatatgtttaactgataacaatatcaagtctataatcctggtaaggataataa |
325 |
Q |
| |
|
|||||||||| || || |||||| |||| ||| |||||||||||| || || | |||||||| ||| ||||| || ||||||| ||||||| |
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| T |
62854 |
ttcttctaaagtttcagggtggtgatgacagcgaccaagatatatccttgaccaacaacaatattaaggctatactcttggtaagtataataa |
62762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 23037030 - 23036858
Alignment:
| Q |
67 |
tttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactg |
166 |
Q |
| |
|
||||| |||||||||||||| || ||| || | |||||||||||||| ||||||||| | ||| | |||| |||||| ||| |||||||||| ||| || |
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|
| T |
23037030 |
tttccctcagctaaatggctacagcgtattactggtttgaggcctaagctggagaggattcatcgacaaactgatcagatattagaaaacatcatcaatg |
23036931 |
T |
|
| Q |
167 |
aacataaagaagcaaagt---caaaagcaaatgaaagtcaaggtggagaagaagaagatctcgtagacattct |
236 |
Q |
| |
|
| |||||||| | ||||| ||||||| || || ||||||| ||| ||||||||||||||||||| |||| |
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|
| T |
23036930 |
agcataaagaggaaaagtacacaaaagccaaagatgatcaaggtagagtagaagaagatctcgtagacgttct |
23036858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 67 - 236
Target Start/End: Complemental strand, 23039907 - 23039735
Alignment:
| Q |
67 |
tttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaattgatcaaatactagaaaacattgtcactg |
166 |
Q |
| |
|
||||| |||||||||||| | || | |||| | ||| |||||||||| || |||||||| ||| | |||| |||||| ||| |||||||||| ||| || |
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|
| T |
23039907 |
tttccctcagctaaatggttacagcttgttactggtatgaggcctaagcttgagaggtttcatcgacaaactgatcagatattagaaaacatcatcaatg |
23039808 |
T |
|
| Q |
167 |
aacataaagaagcaaagt---caaaagcaaatgaaagtcaaggtggagaagaagaagatctcgtagacattct |
236 |
Q |
| |
|
| |||||||| | ||||| ||||||| || || ||||||| || ||||||||||||||||||| |||| |
|
|
| T |
23039807 |
agcataaagaggaaaagtacacaaaagccaaagatgatcaaggtaaagtagaagaagatctcgtagacgttct |
23039735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0554 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0554
Description:
Target: scaffold0554; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 37 - 181
Target Start/End: Original strand, 5626 - 5770
Alignment:
| Q |
37 |
attgcaggaggttttgacatagctgaattatttccttcagctaaatggcttcaacgtgtttccggtttgaggcctaaactggagaggttgcataggcaaa |
136 |
Q |
| |
|
|||||||||||||||||| | | || || ||||| || ||||||||||| |||| ||| | |||||||||||||| || |||| | | ||| | |||| |
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|
| T |
5626 |
attgcaggaggttttgacttgggagatttgtttccatctgctaaatggctacaacaagttactggtttgaggcctaagcttgagatgcttcatcgacaaa |
5725 |
T |
|
| Q |
137 |
ttgatcaaatactagaaaacattgtcactgaacataaagaagcaa |
181 |
Q |
| |
|
|||||||||||| |||||||| ||| ||| ||||||||||||| |
|
|
| T |
5726 |
ctgatcaaatacttgaaaacatcatcaatgagcataaagaagcaa |
5770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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