View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11315_low_4 (Length: 532)
Name: NF11315_low_4
Description: NF11315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11315_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 8e-90; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 8e-90
Query Start/End: Original strand, 11 - 206
Target Start/End: Complemental strand, 23072397 - 23072202
Alignment:
| Q |
11 |
cagagacgatgaccttgtgtcgacaaggttgagaagtaatgttgatagtaataagatcgaaatgccaaaattttgcattcctattttaaggaaggaaaag |
110 |
Q |
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| T |
23072397 |
cagagacgatgaccttgtgtcgtcaaggttgagaagcattgttgatagtaataagatcgaaaggccaaaattttgcattcctatttcaaggaaggaaaag |
23072298 |
T |
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| Q |
111 |
gaggaagatttcatgacgtttttgggtcgtgcaccgcggcagaggcccattaagaggcctaaaaaggttcagaagcagataaacgtatgttgcata |
206 |
Q |
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| T |
23072297 |
gaggaagatttcttgacgtttttgggtcgtgcaccgcggcagaggcccattaagaggcctaaaaaggttcagaagcagataaacgtatgtcgcata |
23072202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 298 - 515
Target Start/End: Complemental strand, 23072131 - 23071916
Alignment:
| Q |
298 |
agaaggttttccctggattgtggttaagagaggttactgctgaaatgtacgaggttccatgatacaaatcagaatgggagattcgagaagaggaaaagga |
397 |
Q |
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| T |
23072131 |
agaaggttttccctggactgtggttaagagaggttactgctgaaatgtacgaggttc-atgatacaaatcagaatgggagatttgggaagaggaaaatga |
23072033 |
T |
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| Q |
398 |
g-gggaagagcttttgatgatggaaactatatatcttcagtgatatatagtttttacttctgaatctttgagatggtgctattattagggnnnnnnnnna |
496 |
Q |
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| T |
23072032 |
gagggaagggcttttgatgatggaaactatat--cttcagtgatatatagtttttacttctgaacctttgagatggtgctattattagggttttttttta |
23071935 |
T |
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| Q |
497 |
tagatattatatggttagt |
515 |
Q |
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| T |
23071934 |
tagatattatatggttagt |
23071916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 23127961 - 23127864
Alignment:
| Q |
295 |
tgcagaaggttttccctggattgtggttaagagaggttactgctgaaatgtacgaggttccatgatacaaatcagaatgggagattcgagaagaggaaa |
393 |
Q |
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||||||| ||||| |||||||||||| |||| || |||| |||||||| |||| ||||| ||||||||||||||||||| ||||| | |||||||||| |
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| T |
23127961 |
tgcagaatgtttttcctggattgtggctaagtgatgttaatgctgaaaagtacaaggtt-catgatacaaatcagaatgagagatctgcgaagaggaaa |
23127864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 295 - 393
Target Start/End: Complemental strand, 23096272 - 23096175
Alignment:
| Q |
295 |
tgcagaaggttttccctggattgtggttaagagaggttactgctgaaatgtacgaggttccatgatacaaatcagaatgggagattcgagaagaggaaa |
393 |
Q |
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| T |
23096272 |
tgcagaatatttttcctggattgtggttaagagaagttaatgaagaaatgtatgaggtt-caagatacaaatcagaatgggaaatctgggaagaggaaa |
23096175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 295 - 392
Target Start/End: Complemental strand, 6963678 - 6963582
Alignment:
| Q |
295 |
tgcagaaggttttccctggattgtggttaagagaggttactgctgaaatgtacgaggttccatgatacaaatcagaatgggagattcgagaagaggaa |
392 |
Q |
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||||||| ||||||||||||||||||||||| ||||||| |||||||||||| |||||| | |||| ||||||| ||| |||||| | ||||||||| |
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| T |
6963678 |
tgcagaatgttttccctggattgtggttaagggaggttaatgctgaaatgtatgaggtt-cttgatgcaaatcaaaataggagatctgcgaagaggaa |
6963582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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