View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11315_low_6 (Length: 381)
Name: NF11315_low_6
Description: NF11315
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11315_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Original strand, 54903746 - 54904111
Alignment:
| Q |
1 |
aatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatcttgacattgcattgt |
100 |
Q |
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| T |
54903746 |
aatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatcttgacattgcattgt |
54903845 |
T |
|
| Q |
101 |
ttcctccaaaggaacagcaaccatgtctgtcgaagaaaaatgagaactgggagaagcaaacttaaagttattgtgcaacatttgatcattgttaaaatcc |
200 |
Q |
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| T |
54903846 |
ttcctccaaaggaacagcaacaatgtctgtcgaagaaaaatgagaactgggagaagcaaacttaaagttattgtgcaacatttgatcattgttaaaatcc |
54903945 |
T |
|
| Q |
201 |
tcactcaatggaacagaattggaagcaaagttagaggaaccacttgtgacggggttaaaagattgtgttgtcacagcagcaccttcaacatgagagtgat |
300 |
Q |
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| T |
54903946 |
tcactcaatggaacagaattggaagcaaagttagaggaaccacttgtgacggggttaaaagattgtgttttcacagcagcaccttcaacatgagagtgat |
54904045 |
T |
|
| Q |
301 |
tgataaatgctactgatttatgtgtttgtatgtgattgcttgagatgcaagaaagagaaacatttg |
366 |
Q |
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| T |
54904046 |
tgataaatgctcctgatttatgtgtttgtatgtgattgcttgagatgcaagaaagagaaacatttg |
54904111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 1 - 356
Target Start/End: Original strand, 54887603 - 54887979
Alignment:
| Q |
1 |
aatccaaggtattgttgaaggaagaactcgcattttgatgttgtgtgtaccatggagcatttataacattcccaagtaagccatcttgacattgcattgt |
100 |
Q |
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| T |
54887603 |
aatccaaggtattgttgaaggaagaacccacattttgctgatgcgtgtaacatgaagccgttacaacactcccaagtaatccatcttgacattgcatcgt |
54887702 |
T |
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| Q |
101 |
ttcctccaaaggaacagcaaccatgtctgtcgaagaaaaat---------------------gagaactgggagaagcaaacttaaagttattgtgcaac |
179 |
Q |
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|||||| ||||||||| ||| | | | |||||||||||| |||||||| | || |||||||| ||| ||||||| | |
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| T |
54887703 |
ttcctctaaaggaacatcaatgacgcgtatcgaagaaaaatcatctggatttttcttaaattgagaactgagtgaggcaaactttaagctattgtgagat |
54887802 |
T |
|
| Q |
180 |
atttgatcattgttaaaatcctcactcaatggaacagaattggaagcaaagttagaggaaccacttgtgacggggttaaaagattgtgttgtcacagcag |
279 |
Q |
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||||||||||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||||| | ||||||||||||| | | || ||||| |
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| T |
54887803 |
atttgatcattattaaaatcctcactcaatggagaaggattggaagcaaagttataggaaccacttgtagcagggttaaaagatttttgttccatagcag |
54887902 |
T |
|
| Q |
280 |
caccttcaacatgagagtgattgataaatgctactgatttatgtgtttgtatgtgattgcttgagatgcaagaaaga |
356 |
Q |
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| T |
54887903 |
gacctccaacagatgggtgatttatgaatgctcttgaattatgtgtttgtaggtgattgcttgagatgcaagaaaga |
54887979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 141 - 359
Target Start/End: Original strand, 54893388 - 54893606
Alignment:
| Q |
141 |
tgagaactgggagaagcaaacttaaagttattgtgcaacatttgatcattgttaaaatcctcactcaatggaacagaattggaagcaaagttagaggaac |
240 |
Q |
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|||||||||||||| ||||| || ||| ||||| | ||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||| |
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| T |
54893388 |
tgagaactgggagaggcaaaatttaagctattgccagaaatttgatcattgttaaaatcctcactcaatggagaaggattggaagcaaagttagatgaac |
54893487 |
T |
|
| Q |
241 |
cacttgtgacggggttaaaagattgtgttgtcacagcagcaccttcaacatgagagtgattgataaatgctactgatttatgtgtttgtatgtgattgct |
340 |
Q |
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| T |
54893488 |
catatgtagcaggattaaaagattttggttccacgtaagcccctccaacagaagagtgatttacaaatgctcctgaattatgtgttgataggttattgct |
54893587 |
T |
|
| Q |
341 |
tgagatgcaagaaagagaa |
359 |
Q |
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| T |
54893588 |
tgagatgcaagaaagagaa |
54893606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 54893232 - 54893352
Alignment:
| Q |
3 |
tccaaggtattgttgaaggaagaactcgcattttgatgttg---tgtgtaccatggagcatttataacattcccaagtaagccatcttgacattgcattg |
99 |
Q |
| |
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||||||||||||||||||||||| || ||||||| || || ||||| |||| ||| |||| ||||||||||||||||||||||||||||||||| | |
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| T |
54893232 |
tccaaggtattgttgaaggaagagctgacattttgctgctgcgtcgtgtaacatgaagcctttacaacattcccaagtaagccatcttgacattgcatcg |
54893331 |
T |
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| Q |
100 |
tttcctccaaaggaacagcaa |
120 |
Q |
| |
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||||||| |||||||||||| |
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| T |
54893332 |
cttcctccgaaggaacagcaa |
54893352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 293 - 359
Target Start/End: Complemental strand, 11186503 - 11186437
Alignment:
| Q |
293 |
agagtgattgataaatgctactgatttatgtgtttgtatgtgattgcttgagatgcaagaaagagaa |
359 |
Q |
| |
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||||||||||||||||||| |||| || | |||| ||| ||||||||||||||||||||||||||| |
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| T |
11186503 |
agagtgattgataaatgctgctgaattttatgttagtagttgattgcttgagatgcaagaaagagaa |
11186437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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