View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11316_low_2 (Length: 249)
Name: NF11316_low_2
Description: NF11316
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11316_low_2 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 160; Significance: 2e-85; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 249
Target Start/End: Complemental strand, 40803511 - 40803293
Alignment:
| Q |
18 |
agaagagttatgaagacaagatttgtagcaaattttatttgaatccatgaaatttatttaggtgaccaaatgataaaggcatcacaatgctcccagagcg |
117 |
Q |
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| T |
40803511 |
agaagagttatgaagacaagatatttagcaaattttatttgaatccttgaaatttatttaggtgaccagatgataaaggcatcacaatgctcccagagcg |
40803412 |
T |
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| Q |
118 |
acaataaaaattacgattaaaataacatcaaaatcacaacaaacattataaaataagatttcatgtttcaattgcattaatctcatcatcttcctctatc |
217 |
Q |
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| T |
40803411 |
acaataaaaattacgattaaaataacatcaaaatcacaaca-------------aagatttcatgtttcaattgcattaatcttatcatcttcctctttc |
40803325 |
T |
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| Q |
218 |
agcttcttctcaataaattcatccaaatcttt |
249 |
Q |
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| T |
40803324 |
agcttcttctcaataaactcatccaaatcttt |
40803293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 59 - 150
Target Start/End: Original strand, 40676674 - 40676765
Alignment:
| Q |
59 |
aatccatgaaatttatttaggtgaccaaatgataaaggcatcacaatgctcccagagcgacaataaaaattacgattaaaataacatcaaaa |
150 |
Q |
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| T |
40676674 |
aatccatgaattttattttgatgacctaatgaaagagacatcacaatgctctcagagcaacaatcaaaattgcaatttaaataacatcaaaa |
40676765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 116
Target Start/End: Complemental strand, 40705907 - 40705852
Alignment:
| Q |
61 |
tccatgaaatttatttaggtgaccaaatgataaaggcatcacaatgctcccagagc |
116 |
Q |
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| T |
40705907 |
tccatgaattttatttagatgacctaatgatagatgcatcacaatgctctcagagc |
40705852 |
T |
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