View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11317_high_2 (Length: 257)

Name: NF11317_high_2
Description: NF11317
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11317_high_2
NF11317_high_2
[»] chr7 (19 HSPs)
chr7 (45-232)||(43996611-43996798)
chr7 (1-43)||(48402502-48402544)
chr7 (1-41)||(20383936-20383976)
chr7 (1-44)||(40786418-40786461)
chr7 (1-43)||(10048286-10048328)
chr7 (1-43)||(34996845-34996887)
chr7 (1-43)||(41816529-41816571)
chr7 (1-41)||(33614081-33614121)
chr7 (1-41)||(45657789-45657829)
chr7 (5-44)||(44063005-44063044)
chr7 (1-39)||(11315536-11315574)
chr7 (1-37)||(3633017-3633053)
chr7 (1-37)||(22643876-22643912)
chr7 (1-45)||(33989805-33989849)
chr7 (1-41)||(35396005-35396045)
chr7 (1-41)||(37031203-37031243)
chr7 (1-41)||(41203993-41204033)
chr7 (1-41)||(46290421-46290461)
chr7 (1-41)||(49024147-49024187)
[»] chr2 (13 HSPs)
chr2 (1-44)||(41322066-41322109)
chr2 (1-35)||(3462599-3462633)
chr2 (1-45)||(13070452-13070496)
chr2 (1-41)||(38376534-38376574)
chr2 (1-41)||(42578582-42578622)
chr2 (1-40)||(4843469-4843508)
chr2 (2-41)||(39640454-39640493)
chr2 (3-45)||(2317612-2317654)
chr2 (1-39)||(9225200-9225238)
chr2 (1-42)||(3207206-3207247)
chr2 (1-42)||(27337183-27337224)
chr2 (1-41)||(31570464-31570504)
chr2 (1-41)||(39676228-39676268)
[»] chr8 (12 HSPs)
chr8 (1-43)||(33099698-33099740)
chr8 (2-41)||(43325450-43325489)
chr8 (1-43)||(9200235-9200277)
chr8 (1-35)||(30266098-30266132)
chr8 (1-38)||(9579397-9579434)
chr8 (1-41)||(2116611-2116651)
chr8 (1-39)||(3547236-3547274)
chr8 (1-43)||(19411945-19411986)
chr8 (1-39)||(44061187-44061225)
chr8 (1-41)||(8747881-8747921)
chr8 (2-42)||(18753956-18753996)
chr8 (1-37)||(25563092-25563128)
[»] chr5 (12 HSPs)
chr5 (1-39)||(8223814-8223852)
chr5 (1-40)||(1157080-1157119)
chr5 (1-44)||(11447327-11447370)
chr5 (1-43)||(233415-233457)
chr5 (1-43)||(19962473-19962515)
chr5 (1-43)||(39039801-39039843)
chr5 (1-41)||(39164417-39164458)
chr5 (1-41)||(17888380-17888420)
chr5 (5-41)||(2683686-2683722)
chr5 (1-41)||(9780161-9780201)
chr5 (1-37)||(26078214-26078250)
chr5 (1-41)||(27878595-27878635)
[»] chr4 (20 HSPs)
chr4 (1-39)||(11671915-11671953)
chr4 (1-39)||(34413072-34413110)
chr4 (1-43)||(42857518-42857560)
chr4 (1-41)||(41326544-41326584)
chr4 (1-37)||(47085897-47085933)
chr4 (1-41)||(53062069-53062109)
chr4 (1-44)||(44937012-44937055)
chr4 (1-44)||(56052739-56052782)
chr4 (3-43)||(8718614-8718654)
chr4 (1-45)||(22422732-22422776)
chr4 (1-43)||(28440457-28440499)
chr4 (1-39)||(33633069-33633107)
chr4 (1-41)||(25052351-25052390)
chr4 (1-45)||(31837470-31837514)
chr4 (1-45)||(32208251-32208295)
chr4 (1-41)||(34411322-34411362)
chr4 (5-41)||(35106274-35106310)
chr4 (1-41)||(44022752-44022792)
chr4 (5-41)||(50381859-50381895)
chr4 (1-33)||(55589840-55589872)
[»] chr3 (17 HSPs)
chr3 (1-41)||(36040324-36040364)
chr3 (1-41)||(43659039-43659079)
chr3 (1-43)||(29109233-29109275)
chr3 (1-38)||(43884900-43884937)
chr3 (1-41)||(28255271-28255311)
chr3 (1-41)||(39197962-39198002)
chr3 (2-46)||(41766731-41766775)
chr3 (5-41)||(52099847-52099883)
chr3 (1-41)||(52796839-52796879)
chr3 (2-40)||(18371098-18371136)
chr3 (1-35)||(44247729-44247763)
chr3 (1-39)||(52253901-52253939)
chr3 (2-43)||(4987016-4987057)
chr3 (1-38)||(24346265-24346302)
chr3 (1-50)||(27516326-27516375)
chr3 (1-34)||(46443992-46444025)
chr3 (3-39)||(20497405-20497441)
[»] chr1 (22 HSPs)
chr1 (1-43)||(2167806-2167848)
chr1 (1-43)||(46085519-46085561)
chr1 (1-47)||(50372767-50372813)
chr1 (1-41)||(11240736-11240776)
chr1 (1-41)||(29232641-29232681)
chr1 (1-44)||(19727768-19727811)
chr1 (5-40)||(36184780-36184815)
chr1 (1-44)||(45337540-45337583)
chr1 (1-40)||(45707960-45707999)
chr1 (1-39)||(11386386-11386424)
chr1 (1-43)||(23202011-23202053)
chr1 (1-43)||(29733303-29733345)
chr1 (1-43)||(30724585-30724627)
chr1 (3-41)||(46600185-46600223)
chr1 (1-38)||(27803245-27803282)
chr1 (2-39)||(30196318-30196355)
chr1 (5-41)||(5510343-5510379)
chr1 (1-41)||(10617336-10617376)
chr1 (1-37)||(13703279-13703315)
chr1 (1-41)||(34918463-34918503)
chr1 (1-41)||(43360270-43360310)
chr1 (3-39)||(52860649-52860685)
[»] scaffold0380 (1 HSPs)
scaffold0380 (1-41)||(45-85)
[»] scaffold0072 (1 HSPs)
scaffold0072 (1-41)||(46512-46552)
[»] chr6 (3 HSPs)
chr6 (1-41)||(251797-251837)
chr6 (1-41)||(3711426-3711466)
chr6 (1-45)||(28470591-28470635)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-40)||(44388-44427)
[»] scaffold0031 (2 HSPs)
scaffold0031 (5-39)||(1486-1520)
scaffold0031 (3-43)||(105525-105565)
[»] scaffold0069 (1 HSPs)
scaffold0069 (1-38)||(35962-35999)
[»] scaffold0459 (1 HSPs)
scaffold0459 (1-45)||(12334-12378)
[»] scaffold0385 (1 HSPs)
scaffold0385 (1-41)||(11909-11948)
[»] scaffold0366 (2 HSPs)
scaffold0366 (1-45)||(9975-10019)
scaffold0366 (1-45)||(13641-13685)
[»] scaffold0287 (1 HSPs)
scaffold0287 (1-37)||(13032-13068)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 45 - 232
Target Start/End: Original strand, 43996611 - 43996798
Alignment:
Q  45 aaagtgagttgagagtgattaagcatttgataggaataaaatgattgtttgannnnnnnnaacatattattgtactgtactaggtgttgaaaccatcact 144  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||        ||||||||||||||||||||||||||||||||||||||||    
T  43996611 aaagtgagttgagagtgattaagtatttgataggaataaaatgtttgtttgattttttttaacatattattgtactgtactaggtgttgaaaccatcact 43996710  T
Q  145 gacacaaggttgaagatgaacagtgttgtttgaaaattatcaattgtgttcttatattctcttacttattcaaattagtcgttgttta 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43996711 gacacaaggttgaagatgaacagtgttgtttgaaaattatcaattgtgttcttatattctcttacttattcaatttagtcgttgttta 43996798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 48402544 - 48402502
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  48402544 tttctctcttcacaacttctcttcctaaccaaacacaccctta 48402502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 20383936 - 20383976
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  20383936 tttctctcttcacaacttctcttctaaaccaaacacaccct 20383976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 40786418 - 40786461
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaa 44  Q
    ||||||||||||||||||||||||| ||||||||||||| ||||    
T  40786418 tttctctcttcacaacttctcttctaaaccaaacacacctttaa 40786461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 10048286 - 10048328
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  10048286 tttctctcttcacaacttctcttttaaaccaaacacaccctta 10048328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 34996845 - 34996887
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    |||||||||||||||||||||||||  ||||||||||||||||    
T  34996845 tttctctcttcacaacttctcttctataccaaacacaccctta 34996887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 41816571 - 41816529
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||||||||||||| | |||||||||||||||||    
T  41816571 tttctctcttcacaacttctcttttaaaccaaacacaccctta 41816529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 33614121 - 33614081
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  33614121 tttctctcttcacaacttctcttttaaaccaaacacaccct 33614081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 45657789 - 45657829
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  45657789 tttctctcttcacaacttctcttccaaaccaaacacaccct 45657829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 44063005 - 44063044
Alignment:
Q  5 tctcttcacaacttctcttcttaaccaaacacacccttaa 44  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  44063005 tctcttcacaatttctcttctaaaccaaacacacccttaa 44063044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 11315536 - 11315574
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  11315536 tttctctcttcacaacttctcttccaaaccaaacacacc 11315574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3633017 - 3633053
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacaca 37  Q
    |||||||||||||||||||||||||  ||||||||||    
T  3633017 tttctctcttcacaacttctcttctacaccaaacaca 3633053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22643912 - 22643876
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacaca 37  Q
    |||||||||||||||||||| |||| |||||||||||    
T  22643912 tttctctcttcacaacttcttttctaaaccaaacaca 22643876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33989805 - 33989849
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaaa 45  Q
    ||||||||||||||||||||| | | ||||||||||||| |||||    
T  33989805 tttctctcttcacaacttctcctataaaccaaacacaccattaaa 33989849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35396045 - 35396005
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||||| |||| |||||||| ||||||||||||||||    
T  35396045 tttctctctttacaatttctcttcataaccaaacacaccct 35396005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37031243 - 37031203
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||||| ||||||||||||||  ||||||||||||||    
T  37031243 tttctctctttacaacttctcttctacaccaaacacaccct 37031203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41203993 - 41204033
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||  ||||| |||||||||    
T  41203993 tttctctcttcacaacttctcttccaaaccacacacaccct 41204033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46290461 - 46290421
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||||||||||||||||||||  |||||||| |||||    
T  46290461 tttctctcttcacaacttctcttctacaccaaacagaccct 46290421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 49024187 - 49024147
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||||||||||||| ||| || |||||||||||||||    
T  49024187 tttctctcttcacaacttttctcctaaaccaaacacaccct 49024147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 41322066 - 41322109
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaa 44  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  41322066 tttctctcttcacaacttctcttctaaaccaaacacacccttaa 41322109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 3462633 - 3462599
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaaca 35  Q
    |||||||||||||||||||||||||||||||||||    
T  3462633 tttctctcttcacaacttctcttcttaaccaaaca 3462599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13070496 - 13070452
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaaa 45  Q
    ||||||||||||||| ||||||||  |||||||||||||||||||    
T  13070496 tttctctcttcacaatttctcttcacaaccaaacacacccttaaa 13070452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38376534 - 38376574
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||||||||||||||||||||  ||||||||||||||    
T  38376534 tttctctcttcacaacttctcttctacaccaaacacaccct 38376574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 42578582 - 42578622
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  42578582 tttctctcttcacaacttctcttctaaaccaaacataccct 42578622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 4843469 - 4843508
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccc 40  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  4843469 tttctctcttcacaatttctcttctaaaccaaacacaccc 4843508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 39640493 - 39640454
Alignment:
Q  2 ttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  39640493 ttctctcttcacaacttctcttttaaaccaaacacaccct 39640454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Complemental strand, 2317654 - 2317612
Alignment:
Q  3 tctctcttcacaacttctcttcttaaccaaacacacccttaaa 45  Q
    |||||||||||||||||||| || |||||||||||| ||||||    
T  2317654 tctctcttcacaacttctctcctaaaccaaacacactcttaaa 2317612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 9225200 - 9225238
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  9225200 tttctctcttcccaacttctcttctaaaccaaacacacc 9225238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3207247 - 3207206
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctt 42  Q
    ||||||||||||||||||||||||  ||||||||| ||||||    
T  3207247 tttctctcttcacaacttctcttccaaaccaaacataccctt 3207206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 27337224 - 27337183
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctt 42  Q
    ||||||||||||||||||||||||  ||||||||| ||||||    
T  27337224 tttctctcttcacaacttctcttccaaaccaaacataccctt 27337183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 31570464 - 31570504
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||| |||||||| || |||||||||||||||    
T  31570464 tttctctcttcacgacttctctcctaaaccaaacacaccct 31570504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39676268 - 39676228
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||  ||||||||||||| |||||||||||||||    
T  39676268 tttctctctttccaacttctcttctgaaccaaacacaccct 39676228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 33099698 - 33099740
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  33099698 tttctctcttcacaacttctcttctaaaccaaacacaccctta 33099740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 41
Target Start/End: Complemental strand, 43325489 - 43325450
Alignment:
Q  2 ttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  43325489 ttctctcttcacaacttctcttctaaaccaaacacaccct 43325450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 9200277 - 9200235
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||||||||||||||| |||| ||||||||||||    
T  9200277 tttctctcttcacaacttctcttctaaacctaacacaccctta 9200235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 30266098 - 30266132
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaaca 35  Q
    |||||||||||||||||||||||||||||||||||    
T  30266098 tttctctcttcacaacttctcttcttaaccaaaca 30266132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9579397 - 9579434
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacac 38  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  9579397 tttctctcttcacaacttctcttctaaaccaaacacac 9579434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2116611 - 2116651
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  2116611 tttctctcttcacaacttctcttccaaaccaaacacaccct 2116651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 3547274 - 3547236
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  3547274 tttctctcttcacaacttctcttccaaaccaaacacacc 3547236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19411986 - 19411945
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    |||||||||||||||||||||||| | ||||||||||||||||    
T  19411986 tttctctcttcacaacttctcttcct-accaaacacaccctta 19411945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 44061225 - 44061187
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  44061225 tttctctcttcacaacttctcttccaaaccaaacacacc 44061187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 8747921 - 8747881
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||| ||||||| | |||||||||||||||    
T  8747921 tttctctcttcacaatttctcttgtaaaccaaacacaccct 8747881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 18753996 - 18753956
Alignment:
Q  2 ttctctcttcacaacttctcttcttaaccaaacacaccctt 42  Q
    |||||||||| ||||||||||||| ||||||||||| ||||    
T  18753996 ttctctcttctcaacttctcttctaaaccaaacacaacctt 18753956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25563128 - 25563092
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacaca 37  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  25563128 tttctctcttcacaacttctcttctaaacaaaacaca 25563092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 8223852 - 8223814
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  8223852 tttctctcttcacaacttctcttcttaaccaaacacacc 8223814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1157080 - 1157119
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccc 40  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  1157080 tttctctcttcacaacttctcttctaaaccaaacacaccc 1157119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 11447327 - 11447370
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaa 44  Q
    ||||||||||||||||||||||||  ||||||||||||||||||    
T  11447327 tttctctcttcacaacttctcttccaaaccaaacacacccttaa 11447370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 233457 - 233415
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||||||||||||||| ||||||||| |||||||    
T  233457 tttctctcttcacaacttctcttctaaaccaaacataccctta 233415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19962515 - 19962473
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  19962515 tttctctcttcagaacttctcttctaaaccaaacacaccctta 19962473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 39039843 - 39039801
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  39039843 tttctctcttcacatcttctcttctaaaccaaacacaccctta 39039801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 39164458 - 39164417
Alignment:
Q  1 tttctctcttcacaacttctc-ttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  39164458 tttctctcttcacaacttctctttcttaaccaaacacaccct 39164417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 17888380 - 17888420
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||| ||||||||| |||||||||||||||    
T  17888380 tttctctcttcacaatttctcttctaaaccaaacacaccct 17888420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 2683722 - 2683686
Alignment:
Q  5 tctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||| |||||||||||| |||||||||||||||    
T  2683722 tctcttcataacttctcttctaaaccaaacacaccct 2683686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 9780201 - 9780161
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||| ||||||||||||||||| | |||||||||||||||    
T  9780201 tttctatcttcacaacttctcttataaaccaaacacaccct 9780161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26078214 - 26078250
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacaca 37  Q
    ||||||||||||| ||||||||||| |||||||||||    
T  26078214 tttctctcttcacgacttctcttctaaaccaaacaca 26078250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 27878635 - 27878595
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||| ||||||||  |||||||||||||||    
T  27878635 tttctctcttcacaatttctcttccaaaccaaacacaccct 27878595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 11671915 - 11671953
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  11671915 tttctctcttcacaacttctcttcttaaccaaacacacc 11671953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 34413072 - 34413110
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  34413072 tttctctcttcacaacttctcttcttaaccaaacacacc 34413110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42857560 - 42857518
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||||||||||| |||||||||||||||||||||    
T  42857560 tttctctcttcacaacttctcctcttaaccaaacacaccctta 42857518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 41326584 - 41326544
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  41326584 tttctctcttcacaacttctcttctaaaccaaacacaccct 41326544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 47085897 - 47085933
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacaca 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  47085897 tttctctcttcacaacttctcttcttaaccaaacaca 47085933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 53062109 - 53062069
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  53062109 tttctctcttcacaacttctcttctaaaccaaacacaccct 53062069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 44937055 - 44937012
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaa 44  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||    
T  44937055 tttctctcttcacaacttctcttctaaaccaaacacatccttaa 44937012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 56052739 - 56052782
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaa 44  Q
    ||||||||||||||| |||||||| |||||||||||||||||||    
T  56052739 tttctctcttcacaatttctcttcataaccaaacacacccttaa 56052782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 8718654 - 8718614
Alignment:
Q  3 tctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||||||||||||  |||||||||||||||||    
T  8718654 tctctcttcacaacttctcttccgaaccaaacacaccctta 8718614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 22422776 - 22422732
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaaa 45  Q
    |||||||||||||||||| |||||  |||||||||||||||||||    
T  22422776 tttctctcttcacaacttttcttccaaaccaaacacacccttaaa 22422732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28440499 - 28440457
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||||| ||||||| | |||||||||||||||||    
T  28440499 tttctctcttcacaatttctcttgtaaaccaaacacaccctta 28440457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 33633107 - 33633069
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    ||||||||||| ||||||||||||| |||||||||||||    
T  33633107 tttctctcttcccaacttctcttctaaaccaaacacacc 33633069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 25052351 - 25052390
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  25052351 tttctctcttcacaacttctcttc-caaccaaacacaccct 25052390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 31837470 - 31837514
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaaa 45  Q
    ||||||||||||||| ||||||| | ||||||||||||| |||||    
T  31837470 tttctctcttcacaatttctcttgtgaaccaaacacaccattaaa 31837514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 32208295 - 32208251
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaaa 45  Q
    ||||||||||||||||||||||| | ||| ||||||||| |||||    
T  32208295 tttctctcttcacaacttctcttataaactaaacacacctttaaa 32208251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 34411362 - 34411322
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||   ||||||||||||||    
T  34411362 tttctctcttcacaacttctcttccataccaaacacaccct 34411322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 35106274 - 35106310
Alignment:
Q  5 tctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||||||||||||| || |||||||||||||||    
T  35106274 tctcttcacaacttctctcctaaaccaaacacaccct 35106310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 44022752 - 44022792
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||| ||||||||  |||||||||||||||    
T  44022752 tttctctcttcacaatttctcttcacaaccaaacacaccct 44022792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 50381895 - 50381859
Alignment:
Q  5 tctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||| | |||||||||||||||    
T  50381895 tctcttcacaacttctcttataaaccaaacacaccct 50381859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 55589872 - 55589840
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaa 33  Q
    ||||||||||||||||||||||||| |||||||    
T  55589872 tttctctcttcacaacttctcttctaaaccaaa 55589840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 36040364 - 36040324
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  36040364 tttctctcttcacaacttctcttcctaaccaaacacaccct 36040324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43659079 - 43659039
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  43659079 tttctctcttcacaacttctcttctaaaccaaacacaccct 43659039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 29109275 - 29109233
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  29109275 tttctctcttcacaacttctcttccaaaccaaacacaccctta 29109233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 43884937 - 43884900
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacac 38  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  43884937 tttctctcttcacaatttctcttcttaaccaaacacac 43884900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 28255271 - 28255311
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||| ||||||||||| |||||||||||||    
T  28255271 tttctctcttcacaatttctcttcttagccaaacacaccct 28255311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 39197962 - 39198002
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||||| |||||||||||||| |||||||||||||||    
T  39197962 tttctctctttacaacttctcttctaaaccaaacacaccct 39198002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 41766731 - 41766775
Alignment:
Q  2 ttctctcttcacaacttctcttcttaaccaaacacacccttaaaa 46  Q
    |||||||||||||| ||||||||  ||||||||||||||||||||    
T  41766731 ttctctcttcacaatttctcttcacaaccaaacacacccttaaaa 41766775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 41
Target Start/End: Original strand, 52099847 - 52099883
Alignment:
Q  5 tctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||| |||||||||||||||    
T  52099847 tctcttcacaacttctcttctaaaccaaacacaccct 52099883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 52796839 - 52796879
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  52796839 tttctctcttcacaacttctcttccaaaccaaacacaccct 52796879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 18371098 - 18371136
Alignment:
Q  2 ttctctcttcacaacttctcttcttaaccaaacacaccc 40  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  18371098 ttctctcttcacaacttctcttctataccaaacacaccc 18371136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 44247729 - 44247763
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaaca 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  44247729 tttctctcttcacaacttctcttctcaaccaaaca 44247763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 52253901 - 52253939
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  52253901 tttctctcttcacaacttctcttttaaaccaaacacacc 52253939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 43
Target Start/End: Original strand, 4987016 - 4987057
Alignment:
Q  2 ttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    |||||||||| ||||||||||||  |||||||||||||||||    
T  4987016 ttctctcttctcaacttctcttccaaaccaaacacaccctta 4987057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 24346265 - 24346302
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacac 38  Q
    ||||||||||||||| ||||||||||| ||||||||||    
T  24346265 tttctctcttcacaatttctcttcttagccaaacacac 24346302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27516326 - 27516375
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaaaaagtg 50  Q
    ||||||||||| ||||||||||||  ||||||||||||||| || |||||    
T  27516326 tttctctcttctcaacttctcttccaaaccaaacacaccctaaataagtg 27516375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 46443992 - 46444025
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaac 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  46443992 tttctctcttcacaatttctcttcttaaccaaac 46444025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 20497405 - 20497441
Alignment:
Q  3 tctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    ||||||||||||||||||||||| ||| |||||||||    
T  20497405 tctctcttcacaacttctcttctaaacaaaacacacc 20497441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2167806 - 2167848
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||||||||||||||  |||||||||||||||||    
T  2167806 tttctctcttcacaacttctcttccaaaccaaacacaccctta 2167848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 46085561 - 46085519
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    |||||||||||| |||||||||||| |||||||||||||||||    
T  46085561 tttctctcttcataacttctcttctaaaccaaacacaccctta 46085519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 47
Target Start/End: Complemental strand, 50372813 - 50372767
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaaaaa 47  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||    
T  50372813 tttctctcttcacaaattctcttctaaaccaaacacaccctaaaaaa 50372767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11240736 - 11240776
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||| ||| |||||||||||||||    
T  11240736 tttctctcttcacaacttctcctctaaaccaaacacaccct 11240776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 29232641 - 29232681
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||||||||||||||||| || |||||||||||||||    
T  29232641 tttctctcttcacaacttctctcctaaaccaaacacaccct 29232681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 19727811 - 19727768
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaa 44  Q
    |||||||||||||||||||||||   ||||||||||||||||||    
T  19727811 tttctctcttcacaacttctcttgagaaccaaacacacccttaa 19727768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 40
Target Start/End: Original strand, 36184780 - 36184815
Alignment:
Q  5 tctcttcacaacttctcttcttaaccaaacacaccc 40  Q
    ||||||||||||||||||||| ||||||||||||||    
T  36184780 tctcttcacaacttctcttctaaaccaaacacaccc 36184815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 45337583 - 45337540
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaa 44  Q
    |||||||||||||||| |||||||| ||||||||||||| ||||    
T  45337583 tttctctcttcacaacatctcttctaaaccaaacacaccattaa 45337540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45707999 - 45707960
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccc 40  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  45707999 tttctctcttcacaacttctcttccaaaccaaacacaccc 45707960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 11386424 - 11386386
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    |||||||||||||||| |||||||| |||||||||||||    
T  11386424 tttctctcttcacaacgtctcttctaaaccaaacacacc 11386386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23202011 - 23202053
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||||||||||||||  ||||||||| |||||||    
T  23202011 tttctctcttcacaacttctcttccaaaccaaacataccctta 23202053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 29733303 - 29733345
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||||||||||||||   ||||||||||||||||    
T  29733303 tttctctcttcacaacttctcttccataccaaacacaccctta 29733345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 30724627 - 30724585
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    |||||||||| |||||||||||||  |||||||||||||||||    
T  30724627 tttctctctttacaacttctcttccaaaccaaacacaccctta 30724585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 41
Target Start/End: Complemental strand, 46600223 - 46600185
Alignment:
Q  3 tctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  46600223 tctctcttcataacttctcttctaaaccaaacacaccct 46600185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 27803245 - 27803282
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacac 38  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  27803245 tttctctctttacaacttctcttctaaaccaaacacac 27803282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 30196318 - 30196355
Alignment:
Q  2 ttctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    ||||||||||||||||| ||||| ||||||||||||||    
T  30196318 ttctctcttcacaacttatcttcctaaccaaacacacc 30196355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 5510379 - 5510343
Alignment:
Q  5 tctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||| ||||||||| |||||||||||||||    
T  5510379 tctcttcacaatttctcttctcaaccaaacacaccct 5510343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 10617336 - 10617376
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||   ||||||||||||||    
T  10617336 tttctctcttcacaacttctcttccataccaaacacaccct 10617376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13703279 - 13703315
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacaca 37  Q
    ||||||||||||||||||||||||  |||||||||||    
T  13703279 tttctctcttcacaacttctcttccaaaccaaacaca 13703315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 34918463 - 34918503
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||| |||||||||||||| || |||||||||||||||    
T  34918463 tttctctattcacaacttctctcctaaaccaaacacaccct 34918503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 43360310 - 43360270
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||  ||||||||| |||||    
T  43360310 tttctctcttcacaacttctcttccaaaccaaacataccct 43360270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 52860649 - 52860685
Alignment:
Q  3 tctctcttcacaacttctcttcttaaccaaacacacc 39  Q
    ||||||||  |||||||||||||||||||||||||||    
T  52860649 tctctcttaccaacttctcttcttaaccaaacacacc 52860685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 85 - 45
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  85 tttctctcttcacaacttctcttccaaaccaaacacaccct 45  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46552 - 46512
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  46552 tttctctcttcacaacttctcttccaaaccaaacacaccct 46512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 251837 - 251797
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  251837 tttctctcttcacaacttctcttccaaaccaaacacaccct 251797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 3711466 - 3711426
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  3711466 tttctctcttcacaacttctcttccaaaccaaacacaccct 3711426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 28470591 - 28470635
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaaa 45  Q
    ||||||||||||||||||||||| | ||| ||||||||| |||||    
T  28470591 tttctctcttcacaacttctcttataaactaaacacacctttaaa 28470635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 44427 - 44388
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccc 40  Q
    ||||||||||||||||||| ||||| ||||||||||||||    
T  44427 tttctctcttcacaacttcacttctaaaccaaacacaccc 44388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 39
Target Start/End: Complemental strand, 1520 - 1486
Alignment:
Q  5 tctcttcacaacttctcttcttaaccaaacacacc 39  Q
    ||||||||||||||||||||| |||||||||||||    
T  1520 tctcttcacaacttctcttctaaaccaaacacacc 1486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 3 - 43
Target Start/End: Complemental strand, 105565 - 105525
Alignment:
Q  3 tctctcttcacaacttctcttcttaaccaaacacaccctta 43  Q
    ||||||||||||| ||||||||| ||| |||||||||||||    
T  105565 tctctcttcacaatttctcttctaaacgaaacacaccctta 105525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 35999 - 35962
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacac 38  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  35999 tttctctcttcacaacttctcttccaaaccaaacacac 35962  T

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Target: scaffold0459 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12378 - 12334
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaaa 45  Q
    ||||||||||||||| ||||||||  |||||||||||| ||||||    
T  12378 tttctctcttcacaatttctcttccaaaccaaacacactcttaaa 12334  T

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Target: scaffold0385 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0385
Description:

Target: scaffold0385; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 11909 - 11948
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacaccct 41  Q
    ||||||||||||||||||||||||  |||||||||||||||    
T  11909 tttctctcttcacaacttctcttc-caaccaaacacaccct 11948  T

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Target: scaffold0366 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10019 - 9975
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaaa 45  Q
    ||||||||||||||| ||||||||  |||||||||||| ||||||    
T  10019 tttctctcttcacaatttctcttccaaaccaaacacactcttaaa 9975  T

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Target: scaffold0366; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13685 - 13641
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacacacccttaaa 45  Q
    ||||||||||||||| ||||||||  |||||||||||| ||||||    
T  13685 tttctctcttcacaatttctcttccaaaccaaacacactcttaaa 13641  T

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Target: scaffold0287 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13068 - 13032
Alignment:
Q  1 tttctctcttcacaacttctcttcttaaccaaacaca 37  Q
    |||||||||||||||||||||||||  ||||||||||    
T  13068 tttctctcttcacaacttctcttctacaccaaacaca 13032  T

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