View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11318_high_1 (Length: 719)
Name: NF11318_high_1
Description: NF11318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11318_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 572; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 11 - 672
Target Start/End: Original strand, 40513438 - 40514087
Alignment:
| Q |
11 |
cataggctgtacgaaacttcatacaaatctgaactatgtaaaacaaatctccaaatgatctaacaactgtgagaataacttcaagagtttttccaatatc |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513438 |
cataagctgtacgaaacttcatacaaatctgaactatgtaaaacaaatctccaaatgatctaacaactgtgagaataacttcaagagtttttccaatatc |
40513537 |
T |
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| Q |
111 |
aatgcaaacttcttctctaaccactggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttccaacgatgt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513538 |
aatgcaaacttcttctctaaccactggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttccaacgatgt |
40513637 |
T |
|
| Q |
211 |
atgagttgtcccctaggatctaatactaatactcnnnnnnnaactctttcatagtcttctgagaatactcttgacaatactcttgttttcaaaaacttgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513638 |
atgagttgtcccctaggatctaatactaatactctttttttaactctttcatagtcttctgagaatactcttgacaatactcttgttttcaaaaacttgt |
40513737 |
T |
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| Q |
311 |
tccttgtttcattctttcgagactttttcgaactttgttcaggtatttgtgttccatcaatgtggtatttcaccttaactccacttgttgtgggaatttt |
410 |
Q |
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| T |
40513738 |
tccttgtttcattctttcgagactttttcgaactttgttcaggtatttgtgttccatcaatgtggtatttcaccttaactccacttgttgtgggaatttt |
40513837 |
T |
|
| Q |
411 |
tgatatttcaggatcatcttcaaacctatgaaaaataatatgaaaagttcataaacttgaagactaattag--ctaaataacttggaattttgaaaatta |
508 |
Q |
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| T |
40513838 |
tgatatttcaggatcatcttcaaacc------------tatgaaaagttcataaacttgaagactaattagtactaaataacttggaattttgaaaatta |
40513925 |
T |
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| Q |
509 |
tttgagggaatttaggaaacacacacctttcaggtcttggattatcaaatcccatactggttttccaaaagaatcaaatttctcttcgaccaaaactatg |
608 |
Q |
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| T |
40513926 |
tttgagggaatttaggaa--acacacctttcagatcttggattatcaaatcccatactggttttccaaaagaatcaaatttctcttcgaccaaaactatg |
40514023 |
T |
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| Q |
609 |
aatctagataacaagaaaaaattggttaatgtattgtggccacaaatatcgatgatggtaacgc |
672 |
Q |
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| T |
40514024 |
aatctagataacaagaaaaaattggttaatgtattgtggccacaaatatcgatgatggtaacgc |
40514087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 101 - 235
Target Start/End: Complemental strand, 21611734 - 21611600
Alignment:
| Q |
101 |
ttccaatatcaatgcaaacttcttctctaaccactggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgtt |
200 |
Q |
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|||||||||||||||| ||||| ||| ||| | ||||||||||||||| || ||||||||||||||||||| |||||||||||| || || |||||||| |
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| T |
21611734 |
ttccaatatcaatgcacacttcatcttgaactattggcaaataaaagaagagaggatccacaaacaaagaaattaaacatgctaccaagaaaatcttgtt |
21611635 |
T |
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| Q |
201 |
ccaacgatgtatgagttgtcccctaggatctaata |
235 |
Q |
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| T |
21611634 |
ccattggtgaatggtttgtcccctaggatcaaata |
21611600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 203
Target Start/End: Complemental strand, 28261605 - 28261535
Alignment:
| Q |
133 |
actggcaaataaaagaacagtggatccacaaacaaagaaactaaacatgctactaaaaatatcttgttcca |
203 |
Q |
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| T |
28261605 |
actggtaagtaaaagaaaagtggatccacaaacaatgaaatcaaacaagctgctaagaatattttgttcca |
28261535 |
T |
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