View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11318_low_2 (Length: 583)
Name: NF11318_low_2
Description: NF11318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11318_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 554; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 20 - 573
Target Start/End: Complemental strand, 43530826 - 43530273
Alignment:
| Q |
20 |
actttccccggcgcctccgcaatatcctccccaagaagaagcgcgacaacttccttcatagtaggcctcctattcggctcaggatgacaacaagccaacc |
119 |
Q |
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| T |
43530826 |
actttccccggcgcctccgcaatatcctccccaagaagaagcgcgacaacttccttcatagtaggcctcctattcggctcaggatgacaacaagccaacc |
43530727 |
T |
|
| Q |
120 |
caagcttcaacaccatctccatatcacccacatcatactcacccttaatcctactatccgcagcttcaaccacacactcttttgcatacaactccctcac |
219 |
Q |
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| T |
43530726 |
caagcttcaacaccatctccatatcacccacatcatactcacccttaatcctactatccgcagcttcaaccacacactcttttgcatacaactccctcac |
43530627 |
T |
|
| Q |
220 |
ccaatcaataagcacaacctcctcctccaccacatccgtctccaacggcctccttccacaagccacctccaacaacaccaccccaaaactatacacatcg |
319 |
Q |
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| T |
43530626 |
ccaatcaataagcacaacctcctcctccaccacatccgtctccaacggcctccttccacaagccacctccaacaacaccaccccaaaactatacacatcg |
43530527 |
T |
|
| Q |
320 |
ctcgccgaagtaggcgctgcaaccgtcgctatctccggcgccaaataccctaaagtccccaccacacgtgtggtattaggaacttgcccatgttggtaaa |
419 |
Q |
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| T |
43530526 |
ctcgccgaagtaggcgctgcaaccgtcgctatctccggcgccaaataccctaaagtccccaccacacgtgtggtattaggaacttgcccatgttggtaaa |
43530427 |
T |
|
| Q |
420 |
gcttagccaaaccaaaatctcccaatcttcctctcatatcaccatccaacaaaatgttactagatttaatatccctatgaataacaacctggtcccaacc |
519 |
Q |
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| T |
43530426 |
gcttagccaaaccaaaatctcccaatcttcctctcatatcaccatccaacaaaatgttactagatttaatatccctatgaataacaacctggtcccaacc |
43530327 |
T |
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| Q |
520 |
atgatgaaggtagctaagcccttctgccacatcaacaagaatcctacgcctttg |
573 |
Q |
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| T |
43530326 |
atgatgaaggtagctaagcccttctgccacatcaacaagaatcctacgcctttg |
43530273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 501
Target Start/End: Original strand, 51820949 - 51820988
Alignment:
| Q |
462 |
catccaacaaaatgttactagatttaatatccctatgaat |
501 |
Q |
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|||| |||||||||||||||||||||| |||||||||||| |
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| T |
51820949 |
catctaacaaaatgttactagatttaacatccctatgaat |
51820988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 428 - 516
Target Start/End: Original strand, 22912719 - 22912807
Alignment:
| Q |
428 |
aaaccaaaatctcccaatcttcctctcatatcaccatccaacaaaatgttactagatttaatatccctatgaataacaacctggtccca |
516 |
Q |
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||||||||||| || ||||| || |||| |||||||| || |||| ||||||| |||||| || |||||||||||||| || ||||| |
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| T |
22912719 |
aaaccaaaatcacctaatctaccattcatttcaccatctaataaaacattactagctttaatgtctctatgaataacaacttgttccca |
22912807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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