View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11318_low_3 (Length: 326)
Name: NF11318_low_3
Description: NF11318
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11318_low_3 |
 | |
|
| [»] scaffold0381 (1 HSPs) |
| | |
|
| [»] scaffold0303 (1 HSPs) |
| | |
|
| [»] scaffold0013 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 8 - 304
Target Start/End: Complemental strand, 4481648 - 4481352
Alignment:
| Q |
8 |
gcgggaggttatgattaagtctgttctacaagccattttgtcttatgttatgagcctttttcaattacctactacacttatcaccactctcggaaggatg |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||| |
|
|
| T |
4481648 |
gcgggaggttatgattaagtctgttctacaagccattatgtcttatgttatgagcctttttcaattacctactacgcttatcaccactatcgaaaggatg |
4481549 |
T |
|
| Q |
108 |
atgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtggaatgg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
4481548 |
atgaattcattttggtgggggcatgacagatctacacatcagagtattaactggttaagttgggaaaagttatccatgcataagtcccatggtggaatgg |
4481449 |
T |
|
| Q |
208 |
ggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatttctttcggatcctaattctcttgtcacgcgtatattcat |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4481448 |
ggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatttctttcggatactaattctcttgtcacgcgtatattcat |
4481352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 102 - 274
Target Start/End: Complemental strand, 12528276 - 12528104
Alignment:
| Q |
102 |
aggatgatgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtg |
201 |
Q |
| |
|
|||||||| ||||| |||||||||||||||| || | |||||| | |||| || | | |||||||||| || || ||||||||||| ||||||| | |
|
|
| T |
12528276 |
aggatgataaattcgttttggtgggggcatggcatgaccacacatagaggtataaattggctaagttgggagaaattgtccatgcataaaactcatgggg |
12528177 |
T |
|
| Q |
202 |
gaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatttctttcgga |
274 |
Q |
| |
|
||||||| ||||| ||||| ||||||||||||||||| ||||| || ||||||| ||||||| |||| ||||| |
|
|
| T |
12528176 |
gaatgggtttcaatgatctctcggctttcaatcttgcgatgttaggtaagcaagcgtggaaacttctatcgga |
12528104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 54563316 - 54563052
Alignment:
| Q |
1 |
aggcagggcgggaggttatgattaagtctgttctacaagccattttgtcttatgttatgagcctttttcaattacctactacacttatcaccactctcgg |
100 |
Q |
| |
|
|||||||||| || |||||||| ||||| ||||| ||||||||| || ||||||||||| |||||||| |||||| | ||| | || || || ||| |
|
|
| T |
54563316 |
aggcagggcgtgaagttatgatcaagtcggttctccaagccattccttcctatgttatgagtctttttcagttaccttccacattgattacttctatcga |
54563217 |
T |
|
| Q |
101 |
aaggatgatgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggt |
200 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||| |||| ||| | | | | ||||| | ||| |||||||||||| |||| || ||||| ||||| |
|
|
| T |
54563216 |
gagaatgattaattcattttggtggggtcatggcagaaatactcgtagaggcattaattggttgagttgggaaaagctatcgattcataaaatccatggg |
54563117 |
T |
|
| Q |
201 |
ggaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatt |
265 |
Q |
| |
|
|| |||| |||||||| | ||||||||||| ||||| |||||||| ||||||||||||||||| |
|
|
| T |
54563116 |
ggtttgggattcaaggacttatcggctttcaaccttgcgatgttgggcaagcaagggtggaaatt |
54563052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 44493509 - 44493782
Alignment:
| Q |
1 |
aggcagggcgggaggttatgattaagtctgttctacaagccattttgtcttatgttatgagcctttttcaattacctactacacttatcaccactctcgg |
100 |
Q |
| |
|
|||||||||| || |||||||| |||||||| || ||||| ||| ||||||||||||||| | ||||||| ||| || || | | | | || | | |
|
|
| T |
44493509 |
aggcagggcgtgaagttatgatcaagtctgtgctccaagctattccgtcttatgttatgagtttatttcaataaccaacaacgttggttatcgctattga |
44493608 |
T |
|
| Q |
101 |
aaggatgatgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggt |
200 |
Q |
| |
|
| |||||||||| | ||||||||||| |||| |||| || | |||||| | || || | | | ||||||||||| ||||| |||||||| | |||||| |
|
|
| T |
44493609 |
acggatgatgaacacgttttggtggggccatggcagaacttctcatcggggcatgaattggatgagttgggaaaaattatcgatgcataaaacacatggt |
44493708 |
T |
|
| Q |
201 |
ggaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatttctttcgga |
274 |
Q |
| |
|
|| ||||| || || ||||| || |||||||||||||| |||||||| ||||| || |||||||||||| |||| |
|
|
| T |
44493709 |
ggcatgggttttaaagatctctcagctttcaatcttgcgatgttgggtaagcagggctggaaatttcttacgga |
44493782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 268
Target Start/End: Original strand, 14483864 - 14484124
Alignment:
| Q |
9 |
cgggaggttatgattaagtctgttctacaagccattttgtcttatgttatgagcctttttcaattacctactacacttatcaccactctcggaaggatga |
108 |
Q |
| |
|
|||||| |||||||||||| ||| || ||||| || |||||||||||||| || || |||||||| ||| ||||| || || | | ||||||| |
|
|
| T |
14483864 |
cgggagattatgattaagtttgtacttcaagctatcccgtcttatgttatgaatctcttccaattaccggatactcttataacatctatagagaggatga |
14483963 |
T |
|
| Q |
109 |
tgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtggaatggg |
208 |
Q |
| |
|
| || || |||||||||||||| | |||| | || ||| || | || || | ||| |||||||||||||| |||||||| || |||||||| |||||||| |
|
|
| T |
14483964 |
taaactctttttggtgggggcacggcagaaccactcataggggcataaattggttgagttgggaaaagttgtccatgcacaaatctcatgggggaatggg |
14484063 |
T |
|
| Q |
209 |
gttcaaggatctttc-ggctttcaatcttgcaatgttgggaaagcaagggtggaaatttct |
268 |
Q |
| |
|
|||||||||||||| ||| |||||||| ||||| | || || |||| |||||||||||| |
|
|
| T |
14484064 |
tttcaaggatctttcgggccttcaatctaccaatgcttggtaaacaagcgtggaaatttct |
14484124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 265
Target Start/End: Original strand, 3237171 - 3237241
Alignment:
| Q |
195 |
catggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatt |
265 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||| || ||| | |||||| | |||||||||||||||||||| |
|
|
| T |
3237171 |
catggtggaatgggattcaaagatcttgcggcgtttaatgtagcaatgctcggaaagcaagggtggaaatt |
3237241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 9 - 300
Target Start/End: Complemental strand, 8863975 - 8863684
Alignment:
| Q |
9 |
cgggaggttatgattaagtctgttctacaagccattttgtcttatgttatgagcctttttcaattacctactacacttatcaccactctcggaaggatga |
108 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||||| |
|
|
| T |
8863975 |
cgggagtttatgattaagtctgttctacaagccattccatcttatgttatgagcctttttcaattacctaccacgcttatcaccactatcgaaaggatga |
8863876 |
T |
|
| Q |
109 |
tgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtggaatggg |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8863875 |
tgaattcattttggtgggggcatgacagatctacacatcggggtattaactagttaagttgggaaaagttatccatgcataagtcccatggtggaatggg |
8863776 |
T |
|
| Q |
209 |
gttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatttctttcggatcctaattctcttgtcacgcgtatat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||| |
|
|
| T |
8863775 |
gttcaaggatctttcggctttcaatcttgcgatgttgggaaagcaagggtggaaatttctttcggagcctaattctctagtcacgcatatat |
8863684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 29960868 - 29961105
Alignment:
| Q |
1 |
aggcagggcgggaggttatgattaagtctgttctacaagccattttgtcttatgttatgagcctttttcaattacctactacacttatcaccactctcgg |
100 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
29960868 |
aggcagggcgggagattatgattaagtctgttctacaagccattccgtcttatgttatgagcctttttcaattacctactacgcttatcaccactatcga |
29960967 |
T |
|
| Q |
101 |
aaggatgatgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||||||| || ||| |
|
|
| T |
29960968 |
aaggatgatgaattcattttggtgggggcatggcagatctacacatctgggtattaactggttaagttgggaaaagttatcaatgcataagtcccacggt |
29961067 |
T |
|
| Q |
201 |
ggaatggggttcaaggatctttcggctttcaatcttgc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29961068 |
ggaatggggttcaaggatctttcggctttcaatcttgc |
29961105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 165 - 274
Target Start/End: Complemental strand, 17207742 - 17207633
Alignment:
| Q |
165 |
agttgggaaaagttatccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaat |
264 |
Q |
| |
|
|||||||||||||| |||||||| || ||||| || ||||| || ||||||||||| || |||||||||||||| || || |||||||||| | |||||| |
|
|
| T |
17207742 |
agttgggaaaagttgtccatgcacaaatctcaagggggaataggtttcaaggatctctcagctttcaatcttgcgatattaggaaagcaagcgaggaaat |
17207643 |
T |
|
| Q |
265 |
ttctttcgga |
274 |
Q |
| |
|
| |||||||| |
|
|
| T |
17207642 |
tcctttcgga |
17207633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 48768505 - 48768672
Alignment:
| Q |
104 |
gatgatgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtgga |
203 |
Q |
| |
|
|||||||||||| ||||||||||| |||| || |||| || || ||||||||| | | || ||||| | |||||| | | |||| ||||||||| |
|
|
| T |
48768505 |
gatgatgaattctttttggtggggtcatggttgaactactcagcgaggtattaactggatgaggtgggagaggttatctgttcctaagcttcatggtggt |
48768604 |
T |
|
| Q |
204 |
atggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatttctttc |
271 |
Q |
| |
|
||||| ||||||||||| || ||||||||| | || ||| | || |||||||||||||| |||||||| |
|
|
| T |
48768605 |
atgggtttcaaggatctctctgctttcaatttggctatgcttggtaagcaagggtggaagtttctttc |
48768672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 6559884 - 6559940
Alignment:
| Q |
15 |
gttatgattaagtctgttctacaagccattttgtcttatgttatgagcctttttcaa |
71 |
Q |
| |
|
|||||||||||||||||| | ||||| |||||||| ||||| ||||| |||||||| |
|
|
| T |
6559884 |
gttatgattaagtctgttttgcaagcaattttgtcatatgtgatgagtatttttcaa |
6559940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 34 - 298
Target Start/End: Complemental strand, 13813370 - 13813106
Alignment:
| Q |
34 |
tacaagccattttgtcttatgttatgagcctttttcaattacctactacacttatcaccactctcggaaggatgatgaattcattttggtgggggcatga |
133 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||||||| | || ||||| ||||||||||| ||| |||||||||||||| |||||||||||||||| |
|
|
| T |
13813370 |
tacaagctattccgtcttatgttatgagtctttttcagcttcccactacgcttatcaccaccatcgaaaggatgatgaatttgttttggtgggggcatgg |
13813271 |
T |
|
| Q |
134 |
cagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaat |
233 |
Q |
| |
|
|| |||||||| | ||||||||| ||| |||||||||||||| |||||||||||||||| |||||||||||| || || || ||| |||| || ||| |
|
|
| T |
13813270 |
tcgaactacacatagaggtattaactggttgagttgggaaaagttttccatgcataagtctcgtggtggaatgggttttaaagaacttacggcctttaat |
13813171 |
T |
|
| Q |
234 |
cttgcaatgttgggaaagcaagggtggaaatttctttcggatcctaattctcttgtcacgcgtat |
298 |
Q |
| |
|
||||| ||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||| |
|
|
| T |
13813170 |
cttgcgatgttgggaaaacaagggtggaaattcctttcggagcctcattctcttgtcacgcgtat |
13813106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 210 - 274
Target Start/End: Complemental strand, 13702051 - 13701987
Alignment:
| Q |
210 |
ttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatttctttcgga |
274 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||| || ||||||| ||| |||||||| ||||| |
|
|
| T |
13702051 |
ttcaaggatctctcggctttcaatcttgcgatgttaggtaagcaagcgtgaaaatttctatcgga |
13701987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0381 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0381
Description:
Target: scaffold0381; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 102 - 274
Target Start/End: Original strand, 8407 - 8579
Alignment:
| Q |
102 |
aggatgatgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtg |
201 |
Q |
| |
|
|||||||| || || |||||||||||||||| |||| | ||||| | |||| || | |||||||||||| || | ||||||||||| |||| | | |
|
|
| T |
8407 |
aggatgataaactcgttttggtgggggcatggcagaaccgcacatagaggtataaattggttaagttgggagaaactgtccatgcataaaactcacaggg |
8506 |
T |
|
| Q |
202 |
gaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatttctttcgga |
274 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||| ||||| || ||||||| |||||||||||||||||| |
|
|
| T |
8507 |
gaatgggtttcaaggatctctcagctttcaatcttgcgatgttaggtaagcaagcgtggaaatttctttcgga |
8579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 102 - 274
Target Start/End: Complemental strand, 27011379 - 27011207
Alignment:
| Q |
102 |
aggatgatgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtg |
201 |
Q |
| |
|
|||||||| || || |||||||||||||||| |||| | ||||| | |||| || | |||||||||||| || | ||||||||||| |||| | | |
|
|
| T |
27011379 |
aggatgataaactcgttttggtgggggcatggcagaaccgcacatagaggtataaattggttaagttgggagaaactgtccatgcataaaactcacaggg |
27011280 |
T |
|
| Q |
202 |
gaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatttctttcgga |
274 |
Q |
| |
|
||||||| ||||||||||| || |||||||||||||| ||||| || ||||||| |||||||||||||||||| |
|
|
| T |
27011279 |
gaatgggtttcaaggatctctcagctttcaatcttgcgatgttaggtaagcaagcgtggaaatttctttcgga |
27011207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 265
Target Start/End: Original strand, 28859176 - 28859393
Alignment:
| Q |
48 |
tcttatgttatgagcctttttcaattacctactacacttatcaccactctcggaaggatgatgaattcattttggtgggggcatgacagatctacacatc |
147 |
Q |
| |
|
|||||||| |||||| | |||||||||||| |||| ||||| ||| || | | ||| ||||||||||| ||||||||||||||| | ||||| | ||| |
|
|
| T |
28859176 |
tcttatgtcatgagcatctttcaattacctgctacgcttattaccgctattgaaagaatgatgaattccttttggtgggggcattaaagatcctccaatc |
28859275 |
T |
|
| Q |
148 |
ggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttggg |
247 |
Q |
| |
|
| |||| |||| |||||||||||||| || |||| |||||| |||| ||||| |||| || || |||| |||||| || ||| | || ||||| || |
|
|
| T |
28859276 |
gtggtatcaactgattaagttgggaaaaattgtccacgcataaaactcaaggtggtttgggttttaaagatcattcggcgtttaatttggcgatgttagg |
28859375 |
T |
|
| Q |
248 |
aaagcaagggtggaaatt |
265 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
28859376 |
caagcaagggtggaaatt |
28859393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 233
Target Start/End: Original strand, 4461045 - 4461174
Alignment:
| Q |
104 |
gatgatgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtgga |
203 |
Q |
| |
|
|||||||||||| ||||||||||| |||| ||| |||| || | ||||||||||| |||| ||||| | |||||| || | |||| |||||||| |
|
|
| T |
4461045 |
gatgatgaattctttttggtggggtcatggtagaactactcagcaaggtattaactagataaggtgggagaggttatctattcctaaggtccatggtggt |
4461144 |
T |
|
| Q |
204 |
atggggttcaaggatctttcggctttcaat |
233 |
Q |
| |
|
||||| ||||||||||| || ||||||||| |
|
|
| T |
4461145 |
atgggtttcaaggatctctccgctttcaat |
4461174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 267
Target Start/End: Original strand, 12353700 - 12353800
Alignment:
| Q |
167 |
ttgggaaaagttatccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaattt |
266 |
Q |
| |
|
|||||||||||| || |||||||| |||| || || ||||| || |||||||||||||| ||||| | || |||||||| |||||||| ||||| ||| |
|
|
| T |
12353700 |
ttgggaaaagttgtcgatgcataaaactcaaggaggcatgggttttaaggatctttcggcgttcaacttagctatgttgggtaagcaaggctggaagttt |
12353799 |
T |
|
| Q |
267 |
c |
267 |
Q |
| |
|
| |
|
|
| T |
12353800 |
c |
12353800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 48 - 265
Target Start/End: Complemental strand, 17754007 - 17753790
Alignment:
| Q |
48 |
tcttatgttatgagcctttttcaattacctactacacttatcaccactctcggaaggatgatgaattcattttggtgggggcatgacagatctacacatc |
147 |
Q |
| |
|
|||||||| |||||| | |||||||||||| ||| ||||| |||||| | | ||| ||||||||||| |||||||||||||||| | ||||| | ||| |
|
|
| T |
17754007 |
tcttatgtcatgagcatctttcaattacctgctatgcttattaccactattgaaagaatgatgaattccttttggtgggggcatggctgatcttccaatc |
17753908 |
T |
|
| Q |
148 |
ggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttggg |
247 |
Q |
| |
|
| |||| |||| ||||||||||||||| || |||| |||||| |||| ||| | |||| || || ||||||||||| || ||| | || ||||| || |
|
|
| T |
17753907 |
gtggtatcaactggttaagttgggaaaaattgtccacgcataaaactcaaggttgtttgggttttaaagatctttcggcgtttaatttggcgatgttagg |
17753808 |
T |
|
| Q |
248 |
aaagcaagggtggaaatt |
265 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
17753807 |
caagaaagggtggaaatt |
17753790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 180 - 274
Target Start/End: Original strand, 17177382 - 17177476
Alignment:
| Q |
180 |
tccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatttctttcgga |
274 |
Q |
| |
|
||||||||||| |||| || |||||||| ||||||||||| ||||| ||||||||||| ||||| || ||||||| |||||||||||||||||| |
|
|
| T |
17177382 |
tccatgcataaaactcacgggggaatgggtttcaaggatctctcggcgttcaatcttgcgatgttaggtaagcaagcgtggaaatttctttcgga |
17177476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 2004159 - 2004054
Alignment:
| Q |
161 |
gttaagttgggaaaagttatccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtgg |
260 |
Q |
| |
|
|||||||||||| || ||||| ||||||||||| ||||| || ||||||||||| ||||||||||| || ||| | || ||||| || |||||||||||| |
|
|
| T |
2004159 |
gttaagttgggagaaattatcaatgcataagtcccatggaggtatggggttcaaagatctttcggcatttaatttggctatgttaggcaagcaagggtgg |
2004060 |
T |
|
| Q |
261 |
aaattt |
266 |
Q |
| |
|
|||||| |
|
|
| T |
2004059 |
aaattt |
2004054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 48 - 265
Target Start/End: Original strand, 18118327 - 18118544
Alignment:
| Q |
48 |
tcttatgttatgagcctttttcaattacctactacacttatcaccactctcggaaggatgatgaattcattttggtgggggcatgacagatctacacatc |
147 |
Q |
| |
|
|||||||| ||||| | |||||||||||| ||| ||||| ||| || | | ||| ||||||||||| |||||||||||||||| |||||| | ||| |
|
|
| T |
18118327 |
tcttatgtcatgagaatctttcaattacctgctatgcttattaccgctattgaaagaatgatgaattccttttggtgggggcatggcagatcctccaatc |
18118426 |
T |
|
| Q |
148 |
ggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttggg |
247 |
Q |
| |
|
| |||| ||| ||||||||||||||| || |||| |||||| |||| ||||| |||| || |||||||||||||| || ||| | || ||||| || |
|
|
| T |
18118427 |
gtggtatcaacgggttaagttgggaaaaattgtccacgcataaaactcaaggtggtttgggttttaaggatctttcggcgtttaatttggcgatgttagg |
18118526 |
T |
|
| Q |
248 |
aaagcaagggtggaaatt |
265 |
Q |
| |
|
||| ||||||||||||| |
|
|
| T |
18118527 |
caagaaagggtggaaatt |
18118544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 266
Target Start/End: Complemental strand, 44314425 - 44314320
Alignment:
| Q |
161 |
gttaagttgggaaaagttatccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtgg |
260 |
Q |
| |
|
||||||||||||||| ||||| | || || |||||| || |||||||| || || ||| ||||||| || ||||| ||||||||||| ||||| ||| |
|
|
| T |
44314425 |
gttaagttgggaaaaattatctgtacacaaaaatcatggaggcatggggtttaaagaccttacggcttttaaccttgcgatgttgggaaaacaaggctgg |
44314326 |
T |
|
| Q |
261 |
aaattt |
266 |
Q |
| |
|
|||||| |
|
|
| T |
44314325 |
aaattt |
44314320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 13708863 - 13708783
Alignment:
| Q |
152 |
tattaactagttaagttgggaaaagttatccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaa |
232 |
Q |
| |
|
|||||||| |||||||||||| || | || ||||||||||| |||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
13708863 |
tattaactggttaagttgggagaaactgtctatgcataagtcccatggtggtatggggttcaaggatctttcaactttcaa |
13708783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 104 - 271
Target Start/End: Original strand, 45013735 - 45013902
Alignment:
| Q |
104 |
gatgatgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaagttatccatgcataagtctcatggtgga |
203 |
Q |
| |
|
|||||||||||| ||||||||||| |||| ||| |||| || || ||||||||| | | || ||||| |||||||| | | | || ||||||||| |
|
|
| T |
45013735 |
gatgatgaattctttttggtggggtcatggtagaactactcagcgaggtattaactggatgaggtgggagaagttatctgttcctgaggttcatggtggt |
45013834 |
T |
|
| Q |
204 |
atggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaaatttctttc |
271 |
Q |
| |
|
|||| ||||||||||| || ||||||||| | || ||| | || |||||||||||||| |||||||| |
|
|
| T |
45013835 |
atggttttcaaggatctctccgctttcaatttggctatgcttggtaagcaagggtggaagtttctttc |
45013902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 26679247 - 26679349
Alignment:
| Q |
163 |
taagttgggaaaagttatccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaa |
262 |
Q |
| |
|
||||||||||||| |||| |||||||| |||| || || ||||| ||||| || ||||||||||||||| | || |||||||| |||||||| ||||| |
|
|
| T |
26679247 |
taagttgggaaaaactatcggtgcataagactcaaggaggtatgggtttcaaagacctttcggctttcaatttggctatgttgggtaagcaaggttggaa |
26679346 |
T |
|
| Q |
263 |
att |
265 |
Q |
| |
|
||| |
|
|
| T |
26679347 |
att |
26679349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 163 - 265
Target Start/End: Original strand, 26950854 - 26950956
Alignment:
| Q |
163 |
taagttgggaaaagttatccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaa |
262 |
Q |
| |
|
||||||||||||| |||| |||||||| |||| || || ||||| ||||| || ||||||||||||||| | || |||||||| |||||||| ||||| |
|
|
| T |
26950854 |
taagttgggaaaaactatcggtgcataagactcaaggaggtatgggtttcaaagacctttcggctttcaatttggctatgttgggtaagcaaggttggaa |
26950953 |
T |
|
| Q |
263 |
att |
265 |
Q |
| |
|
||| |
|
|
| T |
26950954 |
att |
26950956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 69
Target Start/End: Complemental strand, 27041475 - 27041418
Alignment:
| Q |
12 |
gaggttatgattaagtctgttctacaagccattttgtcttatgttatgagcctttttc |
69 |
Q |
| |
|
||||||||||||||||||||| | ||||||||| ||||| ||||||||| |||||| |
|
|
| T |
27041475 |
gaggttatgattaagtctgttttgcaagccattccctcttacgttatgagcatttttc |
27041418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0303 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0303
Description:
Target: scaffold0303; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 105 - 175
Target Start/End: Original strand, 12640 - 12710
Alignment:
| Q |
105 |
atgatgaattcattttggtgggggcatgacagatctacacatcggagtattaactagttaagttgggaaaa |
175 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| | |||| |||| |||||||||||||| ||||| |
|
|
| T |
12640 |
atgatgaattccttttggtgggggcatggcagatcctccaatcgtggtatcaactagttaagttgcgaaaa |
12710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 42627 - 42721
Alignment:
| Q |
168 |
tgggaaaagttatccatgcataagtctcatggtggaatggggttcaaggatctttcggctttcaatcttgcaatgttgggaaagcaagggtggaa |
262 |
Q |
| |
|
|||||||| || || |||||||| ||||| || || ||||| || || ||||||| ||||||||||| || ||||| || |||||||||||||| |
|
|
| T |
42627 |
tgggaaaatttgtcgatgcataaatctcaaggaggtatgggttttaaagatcttttagctttcaatctggctatgttaggtaagcaagggtggaa |
42721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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