View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11319_high_1 (Length: 437)
Name: NF11319_high_1
Description: NF11319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11319_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 384; Significance: 0; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 16 - 419
Target Start/End: Complemental strand, 33160319 - 33159916
Alignment:
| Q |
16 |
atgaaatttatagaagttaccaagtgaatataacaaaaataatatattttgcttaggttgaacatatttgccttgagaattcaaaaccaatgtatcttgg |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33160319 |
atgaaatttatagaagttaccaagtgaatataacaaaaataatatattttgcttaggttgaacatatttgccttgagaattcaaaaccaatgtatcttgg |
33160220 |
T |
|
| Q |
116 |
ggtgggagtagaattctacattcaagttgtaattttggcaatatagattttgatgtgatgctcctctatttcttttcaatataaatttgggaactgtcca |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
33160219 |
ggtgggagtagaattctacattcaagttgtaattttggcaatatagattttgatgtgatgctcctctatttcttttcaatataagtttgggaactgtcca |
33160120 |
T |
|
| Q |
216 |
aactattaattttaatcatatatcaattaggttgtcgtggcttatagccgagttaaaatttcaaatgtgaaattgagagcacacatgacttaaataaaac |
315 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || |
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| T |
33160119 |
aactattaatttaaatcatatatcaattaggttgtcgtggcttatagccgagttaaaatttcaaatgtgaaattaagagcacacatgacttaaataacac |
33160020 |
T |
|
| Q |
316 |
ttaattcataaaacataacaaagttaacaaacagccttcttctagttgcattcgtgatcttactatgatcaacgataatgcatgactcttggctacatca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33160019 |
ttaattcataaaacataacaaagttaacaaacagccttcttctacttgcattcgtgatcttactatgatcaacgataatgcatgactcttggctacatca |
33159920 |
T |
|
| Q |
416 |
caca |
419 |
Q |
| |
|
|||| |
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|
| T |
33159919 |
caca |
33159916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 297 - 418
Target Start/End: Complemental strand, 33182886 - 33182760
Alignment:
| Q |
297 |
cacatgacttaaataaaacttaattcataaaacataa-----caaagttaacaaacagccttcttctagttgcattcgtgatcttactatgatcaacgat |
391 |
Q |
| |
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||||||||||||| || |||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| || |
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| T |
33182886 |
cacatgacttaaacaacacttaattcatataacataataaaacaaagataacaaacagccttcttttagttgcattcgtgatcttactatgatcaacaat |
33182787 |
T |
|
| Q |
392 |
aatgcatgactcttggctacatcacac |
418 |
Q |
| |
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|||||| |||||||||||||||||||| |
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| T |
33182786 |
aatgcacgactcttggctacatcacac |
33182760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 145 - 254
Target Start/End: Original strand, 29719784 - 29719894
Alignment:
| Q |
145 |
taattttggcaatatagattttgatgtgatgctcctctatttcttttcaa-tataaatttgggaactgtccaaactattaattttaatcatatatcaatt |
243 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||| | ||| ||||||||||||||||||||||||| | |||||||||||||| |
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| T |
29719784 |
taattttggcaatatagattttgatgttatgctcctctatttctattcaattgtaagtttgggaactgtccaaactattaatatgcatcatatatcaatt |
29719883 |
T |
|
| Q |
244 |
aggttgtcgtg |
254 |
Q |
| |
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|| || ||||| |
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|
| T |
29719884 |
agattatcgtg |
29719894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 145 - 245
Target Start/End: Original strand, 29659800 - 29659901
Alignment:
| Q |
145 |
taattttggcaatatagattttgatgtgatgctcctctatttcttttcaa-tataaatttgggaactgtccaaactattaattttaatcatatatcaatt |
243 |
Q |
| |
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||||| |||||||||| |||||||||| |||||||||||||||||||||| ||||| ||||||||||||||||| |||||| | ||||||| |||||| |
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| T |
29659800 |
taattatggcaatataaattttgatgttatgctcctctatttcttttcaattataagtttgggaactgtccaaagaattaatatgcatcatatgtcaatt |
29659899 |
T |
|
| Q |
244 |
ag |
245 |
Q |
| |
|
|| |
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|
| T |
29659900 |
ag |
29659901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 334 - 414
Target Start/End: Original strand, 33286759 - 33286839
Alignment:
| Q |
334 |
caaagttaacaaacagccttcttctagttgcattcgtgatcttactatgatcaacgataatgcatgactcttggctacatc |
414 |
Q |
| |
|
|||| |||||||| |||||| |||||||||||||| |||||||||| |||||||| |||||||| ||||| |||||||||| |
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|
| T |
33286759 |
caaatttaacaaatagccttattctagttgcattcatgatcttactgtgatcaacaataatgcaggactcatggctacatc |
33286839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 342 - 413
Target Start/End: Complemental strand, 33141389 - 33141318
Alignment:
| Q |
342 |
acaaacagccttcttctagttgcattcgtgatcttactatgatcaacgataatgcatgactcttggctacat |
413 |
Q |
| |
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||||| |||||| ||||||||||||| ||||||| ||| ||||||||||||||||| ||||| ||||||||| |
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|
| T |
33141389 |
acaaatagccttattctagttgcatttgtgatctcactgtgatcaacgataatgcaagactcatggctacat |
33141318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 29719548 - 29719623
Alignment:
| Q |
26 |
tagaagttaccaagtgaatataacaaaaa-taatatattttgcttaggttgaacatatttgccttgagaattcaaaa |
101 |
Q |
| |
|
||||| |||| ||||| |||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
29719548 |
tagaaattactaagtgtatataacaaaaaatattatattttgcttaggttgaa-atatttgccttgaaaattcaaaa |
29719623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 29659610 - 29659658
Alignment:
| Q |
50 |
aaaaataatatattttgcttaggttgaacatatttgccttgagaattcaa |
99 |
Q |
| |
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||||||| |||||||||||||||||||| ||||||| ||||| ||||||| |
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| T |
29659610 |
aaaaatattatattttgcttaggttgaa-atatttgacttgaaaattcaa |
29659658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 10170479 - 10170590
Alignment:
| Q |
28 |
gaagttaccaagtgaatataacaaaaataatatattttgcttaggttgaacatatttgccttgagaattcaaaaccaatgtatcttggggtgggagtaga |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||| | | || ||| |||||||||| ||||||||||||| ||||||| |
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| T |
10170479 |
gaagttaccaagtgaatataacaaaaataatgtatttttcttagcttgaa-atatcttacatgtgaactcaaaaccaaagtatcttggggtgtgagtaga |
10170577 |
T |
|
| Q |
128 |
attctacattcaa |
140 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10170578 |
attctacattcaa |
10170590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 10178004 - 10178115
Alignment:
| Q |
28 |
gaagttaccaagtgaatataacaaaaataatatattttgcttaggttgaacatatttgccttgagaattcaaaaccaatgtatcttggggtgggagtaga |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||| ||||| ||||| |||| | | || ||| |||||||||| ||||||||||||| ||||||| |
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| T |
10178004 |
gaagttaccaagtgaatataacaaaaataatgtatttttcttagcttgaa-atatcttacatgtgaactcaaaaccaaagtatcttggggtgtgagtaga |
10178102 |
T |
|
| Q |
128 |
attctacattcaa |
140 |
Q |
| |
|
||||||||||||| |
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|
| T |
10178103 |
attctacattcaa |
10178115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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