View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11319_high_4 (Length: 379)
Name: NF11319_high_4
Description: NF11319
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11319_high_4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 41 - 379
Target Start/End: Complemental strand, 54084782 - 54084420
Alignment:
| Q |
41 |
ccaccaccgcgacttctaccaccggatcccgaaccagcccgagagcctgcatatgagcctgcctccgaccctgccccagaaccggaaccggaactagaag |
140 |
Q |
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| T |
54084782 |
ccaccactgcgacttctaccacctgatcccgaaccagcccgagagcctgcatatgagcctgcctccgaccctgccccagaaccggaaccggaactagaag |
54084683 |
T |
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| Q |
141 |
atgaagatgatgatgaacttgagga------agaactagaaccagagccag------------------agccagctcctgctccggctccagagccact |
216 |
Q |
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| T |
54084682 |
atgaagatgatgatgaacttgaggaagaactagaaccagagccagagccagctcctgctccggctccagagccagctcctgctccggctccagagccact |
54084583 |
T |
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| Q |
217 |
gccacctccaattcccaagcctactcctgcaccaagtccaattcccaacccaccaaggtccaaacccaaatccttccttgctactctgctttctgattca |
316 |
Q |
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| T |
54084582 |
gccacctccaattcccaagcctactcctgcaccaagtccaattcccaacccaccgaggtccaaacccaaatccttccttgctactctgctttctgattca |
54084483 |
T |
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| Q |
317 |
ataactgacatcaaaacaagcaccgcaagtaaacaacatgaccaaggtgcagccattgattcc |
379 |
Q |
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| T |
54084482 |
ataactgacatcaaaacgagcaccgcaagtaaacaacatgaccaaggtgcagccattgattcc |
54084420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 41 - 373
Target Start/End: Complemental strand, 54081379 - 54081047
Alignment:
| Q |
41 |
ccaccaccgcgacttctaccaccggatcccgaaccagcccgagagcctgcatatgagcctgcctccgaccctgccccagaaccggaaccggaactagaag |
140 |
Q |
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| T |
54081379 |
ccaccaccgcgacttctaccacctgatcccgaaccagcccgagagcctgcatatgagcctgcttccgaccctgccccggaaccagacccagaactagaag |
54081280 |
T |
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| Q |
141 |
atgaagatgatgatgaacttgaggaagaactagaaccagagccagagccagctcctgctccggctccagagccactgccacctccaattcccaagcctac |
240 |
Q |
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| T |
54081279 |
acgaagaggacgatgaacttgaggaagagctagaaccagaaccagagcctgcaccagctccggctccagagccactgccacctccaattcctaaaccaac |
54081180 |
T |
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| Q |
241 |
tcctgcaccaagtccaattcccaacccaccaaggtccaaacccaaatccttccttgctactctgctttctgattcaataactgacatcaaaacaagcacc |
340 |
Q |
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| T |
54081179 |
tcctgcaccaagtccaattcccaatccaccaaggtccaaacccaaatccttcctagccactctgctttctgattcaataattgacaccaaaacaagcagt |
54081080 |
T |
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| Q |
341 |
gcaagtaaacaacatgaccaaggtgcagccatt |
373 |
Q |
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| T |
54081079 |
gcaagtaaacaacacgaccaaggtgcagccatt |
54081047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 54084832 - 54084802
Alignment:
| Q |
18 |
aaccagagccctgcccatagcctccaccacc |
48 |
Q |
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| T |
54084832 |
aaccagagccctgcccatagcctccaccacc |
54084802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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